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OP869845.1__WBF77147.1__X__00014

Bact-Vir

OP869845.1__WBF77147.1__X__00014

Identity

Accession:
OP869845 ↗
Kingdom:
phage

Quality

79.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pleetrevirus› Lacticaseibacillus_phage_R10.1

TaxID: 3017300

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-28_53-132
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 50.0 4.85e-01 98.9% 61.0%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 50.0 5.36e-01 82.1% 91.3%
4dveA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.67 52.0 4.10e-01 81.1% 86.8%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 45.0 4.27e-01 77.9% 89.3%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 45.0 4.36e-01 77.9% 84.9%
4krdB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 43.0 3.48e-01 75.8% 83.2%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 33.0 3.75e-01 96.8% 75.8%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 34.0 3.66e-01 97.9% 67.5%
3f51C00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 33.0 3.37e-01 97.9% 57.8%
4g10A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 42.0 3.75e-01 80.0% 73.5%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.56 50.0 4.30e-01 100.0% 88.2%
1lkvX02 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.56 43.0 3.88e-01 100.0% 59.8%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 45.0 4.20e-01 90.5% 70.0%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 40.0 4.10e-01 84.2% 78.7%
2yfaB01 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.54 45.0 4.19e-01 92.6% 93.3%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 43.0 3.90e-01 89.5% 71.4%
2qgsB01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.52 39.0 4.03e-01 88.4% 86.4%
1dowA00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.52 42.0 3.32e-01 89.5% 55.6%
3ajmB02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.51 43.0 3.84e-01 90.5% 82.0%
1dk8A02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.51 40.0 4.23e-01 90.5% 95.3%
6vddA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.51 39.0 3.72e-01 83.2% 73.0%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 38.0 3.72e-01 87.4% 72.6%
3u3wA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.50 29.0 3.19e-01 97.9% 72.5%
3c8tA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.50 39.0 3.93e-01 84.2% 92.8%
4p9tA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.50 42.0 3.92e-01 93.7% 93.3%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589001 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 72.0 6.85e-01 100.0% 83.3%
3668669 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.80 60.0 6.36e-01 81.1% 88.2%
3946805 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.79 58.0 6.43e-01 76.8% 96.0%
3644937 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.79 63.0 5.24e-01 84.2% 53.1%
3339569 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.78 62.0 6.44e-01 84.2% 89.9%
4511316 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.78 56.0 4.85e-01 74.7% 50.4%
3329805 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.78 62.0 5.14e-01 84.2% 50.0%
3297365 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.78 61.0 4.99e-01 84.2% 46.7%
3347305 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.78 62.0 5.07e-01 84.2% 49.7%
4148139 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.77 60.0 5.06e-01 84.2% 50.3%
4084282 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.77 59.0 6.16e-01 82.1% 89.4%
4060124 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.77 61.0 5.15e-01 84.2% 51.6%
3303765 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.77 61.0 5.06e-01 84.2% 51.2%
3980765 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 61.0 5.01e-01 84.2% 49.1%
4253265 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.76 61.0 4.99e-01 84.2% 49.1%
4258677 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.75 55.0 4.10e-01 77.9% 32.0%
3974118 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 62.0 6.39e-01 100.0% 95.6%
4034495 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 65.0 6.32e-01 100.0% 94.3%
3027028 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.72 51.0 4.91e-01 73.7% 76.1%
4524644 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.68 52.0 4.06e-01 84.2% 38.0%
4340199 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 60.0 5.24e-01 100.0% 84.8%
3208781 5059.1.1.8 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Mg_trans_NIPA 0.67 52.0 3.66e-01 83.2% 43.0%
4165729 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.64 49.0 4.13e-01 84.2% 47.9%
3964463 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.62 48.0 4.59e-01 84.2% 73.6%
3546820 110.1.1.17 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CC4_RECK 0.61 36.0 4.32e-01 91.6% 98.2%
4491672 601.7.1.6 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › GlnD_UR_UTase 0.60 41.0 3.49e-01 70.5% 68.8%
4033888 101.1.1.489 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF722 0.59 52.0 4.71e-01 100.0% 97.7%
3280686 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.58 43.0 4.29e-01 84.2% 76.0%
3482909 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 42.0 3.11e-01 77.9% 44.1%
3200990 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 45.0 3.85e-01 85.3% 58.0%
3787293 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.55 41.0 3.75e-01 88.4% 60.0%
3594732 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 45.0 3.75e-01 90.5% 51.8%
3749655 101.1.17.16 ↗ alpha arrays › HTH › HTH › FF domain › FF_RHG35_4th 0.54 43.0 3.89e-01 91.6% 62.3%
4121308 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.54 37.0 3.64e-01 86.3% 64.8%
3236141 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.52 43.0 3.85e-01 90.5% 84.4%
3282600 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.52 40.0 2.84e-01 84.2% 82.8%
3396612 110.1.1.12 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › RECK-like_N 0.51 40.0 4.03e-01 87.4% 90.0%
3929891 601.16.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › Focal_AT 0.51 43.0 3.85e-01 91.6% 98.5%