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OP869846.1__WBY51839.1__X__00044

Bact-Vir

OP869846.1__WBY51839.1__X__00044

Identity

Accession:
OP869846 ↗
Kingdom:
phage

Quality

91.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Junavirus› Lacticaseibacillus_phage_R18.1

TaxID: 3017301

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-73
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 49.0 5.48e-01 80.6% 92.2%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 48.0 5.25e-01 79.1% 90.4%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 49.0 5.20e-01 77.6% 81.4%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.71 55.0 3.87e-01 85.1% 30.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 50.0 5.39e-01 80.6% 91.2%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.69 52.0 4.63e-01 80.6% 62.1%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.69 50.0 4.43e-01 77.6% 62.9%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 46.0 4.69e-01 70.1% 100.0%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 46.0 4.70e-01 70.1% 100.0%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.67 51.0 5.18e-01 82.1% 83.6%
5bncA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.66 48.0 4.28e-01 76.1% 75.3%
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 44.0 4.33e-01 70.1% 93.2%
4gnxB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 39.0 3.23e-01 70.1% 33.6%
4l5tB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 40.0 3.67e-01 73.1% 47.3%
2xgtB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 44.0 3.93e-01 76.1% 86.1%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.63 39.0 3.70e-01 74.6% 51.2%
2eqsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 42.0 3.89e-01 70.1% 88.8%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.62 40.0 4.32e-01 76.1% 81.5%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.62 43.0 3.79e-01 73.1% 61.0%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 4.41e-01 79.1% 76.9%
6nrzA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 44.0 3.48e-01 79.1% 87.7%
1bbuA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 44.0 3.56e-01 79.1% 84.3%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.60 44.0 3.81e-01 80.6% 62.8%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 41.0 4.22e-01 74.6% 77.0%
1ou8A00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.60 44.0 3.89e-01 82.1% 66.0%
4up7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 45.0 3.51e-01 83.6% 80.9%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.01e-01 83.6% 78.1%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 39.0 3.23e-01 71.6% 60.7%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 42.0 4.00e-01 80.6% 95.2%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 43.0 3.61e-01 85.1% 74.2%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 44.0 2.98e-01 85.1% 54.0%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 46.0 4.65e-01 91.0% 100.0%
5zg8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 41.0 3.63e-01 80.6% 86.3%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 38.0 3.98e-01 77.6% 82.0%
3nemA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 42.0 3.73e-01 89.6% 85.7%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 40.0 2.84e-01 86.6% 44.9%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.53 42.0 3.34e-01 91.0% 62.1%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 37.0 2.98e-01 73.1% 80.0%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 39.0 2.77e-01 86.6% 46.2%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 39.0 3.38e-01 88.1% 91.7%
1rpyB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 38.0 3.54e-01 80.6% 81.4%
4pifA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.51 36.0 2.89e-01 74.6% 66.9%
3h6rA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 42.0 3.23e-01 91.0% 91.4%
2kjpA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 35.0 3.38e-01 73.1% 98.7%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 40.0 3.47e-01 91.0% 95.6%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 38.0 3.43e-01 85.1% 97.0%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3976834 4.1.1.156 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2158 0.81 52.0 5.88e-01 76.1% 88.0%
4101502 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.76 52.0 5.76e-01 79.1% 88.9%
3941391 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 50.0 5.25e-01 74.6% 75.0%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 58.0 5.97e-01 82.1% 85.7%
3485965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 54.0 5.66e-01 80.6% 83.3%
3328489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 53.0 5.26e-01 80.6% 71.4%
4177200 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.74 52.0 5.64e-01 80.6% 89.1%
4079197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 54.0 4.95e-01 80.6% 62.4%
3727542 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 53.0 4.76e-01 79.1% 58.9%
959119 4.1.1.75 ↗ beta barrels › SH3 › SH3 › SH3 › NdhS 0.70 50.0 5.42e-01 79.1% 92.6%
5036498 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.70 52.0 5.03e-01 85.1% 70.7%
4975478 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.70 53.0 4.93e-01 82.1% 84.7%
3385864 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.69 46.0 4.81e-01 70.1% 76.7%
3456496 4.1.1.75 ↗ beta barrels › SH3 › SH3 › SH3 › NdhS 0.69 52.0 4.32e-01 83.6% 47.0%
3281945 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 58.0 5.26e-01 94.0% 80.0%
3507003 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 50.0 4.87e-01 82.1% 90.7%
2516752 2.1.1.32 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TIP49 0.67 45.0 4.82e-01 73.1% 82.8%
3259503 2.1.1.142 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HROB 0.66 45.0 3.77e-01 71.6% 64.2%
5001589 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.66 53.0 4.65e-01 86.6% 63.0%
3965386 2.4.1.6 ↗ beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.66 48.0 4.00e-01 77.6% 44.1%
4934734 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.66 47.0 3.83e-01 77.6% 47.0%
3476052 2.1.1.142 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HROB 0.65 45.0 3.46e-01 71.6% 52.0%
5016920 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.65 47.0 4.56e-01 77.6% 71.8%
3166329 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.65 47.0 3.92e-01 76.1% 48.3%
4361334 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.65 44.0 3.68e-01 77.6% 38.4%
4497266 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.65 47.0 4.00e-01 77.6% 50.0%
3387994 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.65 46.0 4.42e-01 76.1% 71.2%
4434271 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.65 46.0 3.83e-01 76.1% 47.2%
5020056 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.64 46.0 3.89e-01 77.6% 48.3%
3743110 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.64 47.0 4.09e-01 79.1% 96.2%
3838561 3454.1.1.0 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.63 44.0 4.45e-01 71.6% 100.0%
3623534 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 44.0 4.03e-01 73.1% 94.4%
5000498 896.1.1.1 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.63 46.0 4.82e-01 79.1% 96.7%
4953898 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.63 45.0 3.73e-01 76.1% 45.6%
3280978 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.63 42.0 4.18e-01 70.1% 81.4%
4144799 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.62 40.0 4.01e-01 71.6% 62.9%
3969312 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.62 43.0 4.27e-01 73.1% 75.7%
3867672 2.1.1.22 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HIN 0.62 41.0 4.16e-01 70.1% 91.2%
6883 223.5.1.1 ↗ a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like › YNR034W-A-like 0.61 47.0 4.20e-01 85.1% 96.9%
3227986 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 42.0 4.05e-01 74.6% 98.8%
4062751 2.1.1.13 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.60 39.0 4.08e-01 71.6% 73.3%
4668205 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.60 41.0 3.03e-01 70.1% 58.9%
5026951 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 40.0 3.39e-01 76.1% 37.6%
4060909 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 43.0 3.49e-01 79.1% 42.8%
4012836 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 43.0 3.43e-01 80.6% 79.3%
3452782 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 41.0 3.17e-01 74.6% 62.5%
3986515 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.58 45.0 3.08e-01 85.1% 55.4%
3253321 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 41.0 4.24e-01 74.6% 87.7%
4188283 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.58 43.0 4.08e-01 79.1% 85.0%
5012545 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.58 41.0 3.75e-01 74.6% 70.0%
3621264 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 39.0 4.06e-01 70.1% 81.7%
4008872 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.57 46.0 3.16e-01 91.0% 56.5%
3401966 2.1.1.350 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30298 0.57 39.0 2.98e-01 73.1% 82.2%
3387861 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.57 42.0 3.53e-01 79.1% 91.3%
4101241 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.57 39.0 3.51e-01 74.6% 49.0%
1924009 227.1.1.10 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_PAP 0.57 39.0 3.16e-01 71.6% 91.7%
3385764 4954.1.1.0 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit 0.56 41.0 4.02e-01 79.1% 88.0%
4450697 2007.1.12.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase 0.56 40.0 2.67e-01 76.1% 59.3%
3865082 9.13.1.0 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.56 39.0 3.59e-01 74.6% 75.6%
3170809 60.2.1.1 ↗ beta barrels › SPOC domain-like › Sld3 N-terminal domain › Sld3 N-terminal domain › Sld3_N 0.55 40.0 3.48e-01 80.6% 72.2%
3474422 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 38.0 3.05e-01 71.6% 73.6%
3528425 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.55 44.0 3.71e-01 89.6% 94.8%
3241311 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 41.0 3.11e-01 89.6% 98.9%
3832602 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.52 36.0 3.19e-01 76.1% 59.1%
4266074 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.51 35.0 3.59e-01 76.1% 81.7%
4011254 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 37.0 2.43e-01 79.1% 40.3%
4944313 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 35.0 2.85e-01 100.0% 37.0%
4315057 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.50 40.0 3.33e-01 95.5% 93.6%