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OP870147.1__WBF80781.1__F31_0114__00114
Bact-VirOP870147.1__WBF80781.1__F31_0114__00114
Identity
- Accession:
- OP870147 ↗
- Kingdom:
- phage
Quality
72.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Mosigvirus›
Escherichia_phage_vB_Eco_F31
TaxID: 3003734
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-68
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01228.27 best | Gly_radical | 46.4 | 6.70e-12 | 61.7% | 27.4% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cm5A00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.94 | 83.0 | 4.48e-01 | 100.0% | 5.9% |
| 6vxcA01 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.93 | 83.0 | 4.47e-01 | 100.0% | 5.7% |
| 2f3oA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.89 | 77.0 | 4.16e-01 | 100.0% | 5.8% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 42.0 | 3.06e-01 | 72.3% | 21.8% |
| 2ihmA04 | 3.30.210.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain | 0.65 | 40.0 | 3.50e-01 | 70.2% | 40.6% |
| 4cvnA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 42.0 | 2.82e-01 | 100.0% | 17.3% |
| 5zyrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 40.0 | 2.82e-01 | 95.7% | 20.5% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 43.0 | 3.46e-01 | 100.0% | 36.8% |
| 2ccqA00 | 1.20.58.2190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 51.0 | 4.17e-01 | 100.0% | 74.7% |
| 1r7jA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 40.0 | 3.29e-01 | 100.0% | 35.6% |
| 1qssA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 41.0 | 2.86e-01 | 76.6% | 93.5% |
| 3fhnA02 | 1.20.58.1420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain B | 0.57 | 42.0 | 3.24e-01 | 83.0% | 84.6% |
| 3lomA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.56 | 40.0 | 2.43e-01 | 97.9% | 12.2% |
| 3nrtA00 | 6.20.350.10 | Special › Other non-globular › Actin; Chain A, domain 4 › | 0.53 | 46.0 | 3.72e-01 | 100.0% | 66.7% |
| 2gauA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 40.0 | 3.52e-01 | 91.5% | 96.3% |
| 4n06A02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.52 | 40.0 | 2.63e-01 | 91.5% | 88.3% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.52 | 42.0 | 3.43e-01 | 93.6% | 76.6% |
| 8gthB01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.51 | 44.0 | 3.47e-01 | 95.7% | 64.9% |
| 1oltA02 | 1.10.10.920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.51 | 37.0 | 3.41e-01 | 95.7% | 92.6% |
| 4j20A00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.50 | 43.0 | 3.57e-01 | 100.0% | 55.7% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3945072 | 7090.1.1.1 ↗ | extended segments › Glycyl radical domain › Glycyl radical domain › Glycyl radical domain › Gly_radical | 0.98 | 89.0 | 7.80e-01 | 95.7% | 69.2% |
| 4210436 | 7090.1.1.1 ↗ | extended segments › Glycyl radical domain › Glycyl radical domain › Glycyl radical domain › Gly_radical | 0.97 | 88.0 | 6.19e-01 | 95.7% | 36.0% |
| 4542083 | 7090.1.1.1 ↗ | extended segments › Glycyl radical domain › Glycyl radical domain › Glycyl radical domain › Gly_radical | 0.96 | 87.0 | 5.84e-01 | 100.0% | 30.4% |
| 3946197 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.95 | 85.0 | 4.95e-01 | 100.0% | 13.6% |
| 5078592 | 7090.1.1.1 ↗ | extended segments › Glycyl radical domain › Glycyl radical domain › Glycyl radical domain › Gly_radical | 0.94 | 87.0 | 7.10e-01 | 100.0% | 58.7% |
| 2529330 | 7090.1.1.1 ↗ | extended segments › Glycyl radical domain › Glycyl radical domain › Glycyl radical domain › Gly_radical | 0.92 | 82.0 | 5.80e-01 | 100.0% | 35.4% |
| 2528446 | 7090.1.1.1 ↗ | extended segments › Glycyl radical domain › Glycyl radical domain › Glycyl radical domain › Gly_radical | 0.89 | 77.0 | 5.62e-01 | 100.0% | 37.5% |
| 2630430 | 7090.1.1.1 ↗ | extended segments › Glycyl radical domain › Glycyl radical domain › Glycyl radical domain › Gly_radical | 0.88 | 77.0 | 7.23e-01 | 100.0% | 80.4% |
| 2530244 | 7090.1.1.1 ↗ | extended segments › Glycyl radical domain › Glycyl radical domain › Glycyl radical domain › Gly_radical | 0.88 | 76.0 | 5.88e-01 | 100.0% | 45.9% |
| 3670890 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.64 | 47.0 | 3.42e-01 | 97.9% | 27.4% |
| 3450582 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.64 | 45.0 | 3.36e-01 | 97.9% | 26.9% |
| 3643738 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.63 | 47.0 | 3.17e-01 | 100.0% | 20.5% |
| 3425736 | 3525.1.1.1 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET | 0.61 | 46.0 | 3.77e-01 | 85.1% | 71.6% |
| 3606470 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.60 | 44.0 | 2.96e-01 | 80.9% | 71.3% |
| 3607771 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.60 | 43.0 | 2.61e-01 | 76.6% | 50.9% |
| 3621327 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.60 | 43.0 | 2.79e-01 | 78.7% | 84.8% |
| 3456656 | 3525.1.1.1 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET | 0.59 | 47.0 | 4.26e-01 | 89.4% | 100.0% |
| 3166153 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.57 | 46.0 | 3.53e-01 | 100.0% | 46.9% |