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WAE39430.1

Arc-Vir

OP880252__WAE39430.1__LDLAKGPJ-00006__00006

Identity

Accession:
OP880252 ↗
Protein ID:
WAE39430.1 ↗
Kingdom:
archaea

Quality

63.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nakonvirales› Ekchuahviridae› Kukulkanvirus› Methanophagales_virus_GBV301

TaxID: 2999280

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 36-97
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 50.0 4.99e-01 96.8% 68.8%
6rxaA01 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.73 46.0 4.09e-01 85.5% 46.0%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 49.0 4.72e-01 98.4% 62.0%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 43.0 4.78e-01 87.1% 78.7%
1uelB00 6.10.300.40 Special › Helix non-globular › cAMP-dependent Protein Kinase, Chain A › 0.68 32.0 3.61e-01 100.0% 58.3%
2qvaA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.67 40.0 4.33e-01 98.4% 71.7%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.65 46.0 4.10e-01 96.8% 52.2%
3l9wA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 49.0 3.58e-01 83.9% 91.4%
3hdtA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 54.0 3.99e-01 98.4% 92.9%
4didB01 1.20.58.450 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog 0.62 54.0 4.46e-01 100.0% 73.7%
2e6oA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.60 42.0 3.73e-01 72.6% 81.6%
1o6zA01 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.59 46.0 3.41e-01 83.9% 55.9%
1wh5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 40.0 3.79e-01 93.5% 58.7%
1qlbA04 3.10.20.820 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 43.0 3.72e-01 82.3% 61.7%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 48.0 3.52e-01 100.0% 77.2%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.52 42.0 4.07e-01 95.2% 78.3%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 43.0 4.20e-01 90.3% 95.5%
3jr7A01 3.40.50.10440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 0.52 42.0 3.39e-01 88.7% 84.7%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5056276 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.77 67.0 4.97e-01 98.4% 65.6%
3374727 315.1.1.11 ↗ a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › DUF7746 0.75 55.0 5.84e-01 83.9% 89.1%
3374875 101.1.1.359 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF7746 0.73 56.0 5.95e-01 90.3% 92.7%
2834664 540.1.1.2 ↗ few secondary structure elements › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › COX1 0.71 44.0 4.04e-01 88.7% 49.4%
3520048 129.1.1.14 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › DUF2520 0.71 49.0 3.96e-01 88.7% 39.1%
4983680 7064.1.1.0 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 0.68 57.0 4.35e-01 90.3% 88.4%
2979134 167.1.1.1 ↗ alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 0.66 50.0 4.11e-01 80.6% 61.6%
4369740 132.3.1.0 ↗ alpha bundles › ACP-like › Hypothetical protein YjbJ › Hypothetical protein YjbJ 0.66 39.0 3.91e-01 77.4% 56.9%
3056876 167.1.1.0 ↗ alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 0.66 50.0 4.11e-01 80.6% 61.6%
3829000 3161.1.1.1 ↗ alpha duplicates or obligate multimers › LOB domain › LOB domain › LOB domain › LOB 0.62 51.0 4.76e-01 88.7% 94.7%
3391600 101.1.1.313 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF29968 0.62 53.0 5.01e-01 96.8% 84.0%
3576225 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.60 41.0 2.89e-01 75.8% 22.6%
3469758 3787.3.1.1 ↗ alpha bundles › HAD superfamily helical bundle insertion domain › Insertion domain in cytosolic IMP-GMP specific 5'-nucleotidase › Insertion domain in cytosolic IMP-GMP specific 5'-nucleotidase › 5_nucleotid 0.59 41.0 3.40e-01 90.3% 40.9%
4090700 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 36.0 3.22e-01 90.3% 44.4%
3754841 2498.1.1.5 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13,Peptidase_M13_N 0.55 49.0 2.80e-01 98.4% 12.8%
3355500 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.54 42.0 2.52e-01 85.5% 14.7%
3693975 186.2.1.1 ↗ alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain › VEFS-Box 0.54 40.0 3.25e-01 88.7% 40.0%
4991198 2.1.1.359 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HupF_HypC 0.53 48.0 3.88e-01 100.0% 90.4%
None — 0.52 40.0 3.63e-01 87.1% 66.3%