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WAE39457.1

Arc-Vir

OP880252__WAE39457.1__LDLAKGPJ-00033__00033

Identity

Accession:
OP880252 ↗
Protein ID:
WAE39457.1 ↗
Kingdom:
archaea

Quality

73.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nakonvirales› Ekchuahviridae› Kukulkanvirus› Methanophagales_virus_GBV301

TaxID: 2999280

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-80
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.72 55.0 4.26e-01 81.0% 89.8%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 44.0 4.08e-01 77.2% 100.0%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.60 41.0 4.12e-01 82.3% 71.8%
1cjxB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 45.0 3.40e-01 83.5% 45.5%
1x67A01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.58 44.0 3.71e-01 81.0% 63.2%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 36.0 3.62e-01 89.9% 62.8%
4bwiB01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 43.0 3.32e-01 83.5% 81.2%
1m4jA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.56 42.0 3.59e-01 81.0% 66.9%
1vkcA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 42.0 3.54e-01 81.0% 48.9%
2iayA00 3.30.1820.10 Alpha Beta › 2-Layer Sandwich › Lp2179-like fold › Lp2179-like 0.55 44.0 3.93e-01 87.3% 60.5%
5llyA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 43.0 3.34e-01 87.3% 88.6%
3u3gA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 34.0 2.82e-01 94.9% 34.3%
6p58A00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 41.0 3.42e-01 83.5% 91.3%
3w2zA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 41.0 3.24e-01 83.5% 80.9%
2i00C01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 40.0 3.37e-01 81.0% 49.3%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 2.98e-01 93.7% 55.0%
1t3yA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.54 41.0 3.48e-01 82.3% 60.3%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.53 42.0 3.35e-01 88.6% 82.4%
2qybA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 39.0 3.26e-01 82.3% 89.4%
7lscA01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 40.0 3.31e-01 83.5% 91.9%
1f5mA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 41.0 3.26e-01 88.6% 77.8%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 38.0 3.56e-01 93.7% 62.0%
2ob0C01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 41.0 3.29e-01 87.3% 42.6%
3fbuA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 36.0 2.96e-01 83.5% 36.1%
1jssA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 37.0 2.86e-01 79.7% 32.7%
3i9sA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 39.0 3.17e-01 84.8% 68.3%
2fe7B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 38.0 3.10e-01 87.3% 39.8%
2hesX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 39.0 2.67e-01 86.1% 33.4%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.50 33.0 3.60e-01 72.2% 82.8%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.50 32.0 3.02e-01 79.7% 51.0%
7r8iA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 38.0 2.79e-01 81.0% 41.5%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5077010 2011.2.1.7 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.64 47.0 3.37e-01 79.7% 29.8%
3214110 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.62 42.0 2.73e-01 79.7% 15.9%
4934084 2011.2.1.7 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.62 46.0 3.30e-01 79.7% 31.1%
3406956 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.59 44.0 3.72e-01 81.0% 62.2%
3602793 7512.1.1.24 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_5 0.58 43.0 3.11e-01 78.5% 29.6%
4111224 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.56 42.0 3.37e-01 82.3% 81.8%
4028464 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 42.0 2.86e-01 82.3% 39.8%
2841932 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.55 43.0 3.78e-01 87.3% 91.3%
3970434 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.55 41.0 3.39e-01 81.0% 98.6%
5033125 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.54 40.0 3.36e-01 81.0% 49.7%
3888254 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 30.0 3.73e-01 94.9% 95.6%
3164768 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.53 39.0 3.32e-01 82.3% 45.7%
165355 223.1.1.23 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.53 39.0 3.26e-01 82.3% 89.4%
4243248 213.1.1.6 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.52 41.0 2.96e-01 87.3% 64.3%
4927763 213.1.1.29 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_9 0.52 39.0 3.07e-01 79.7% 39.4%
3498091 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.52 42.0 3.66e-01 100.0% 56.2%
3498950 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 37.0 2.53e-01 75.9% 80.0%
3255162 3662.1.1.1 ↗ a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC3 0.51 39.0 3.53e-01 98.7% 59.1%
3460111 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.50 42.0 2.91e-01 100.0% 25.0%
3269520 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.50 40.0 3.05e-01 91.1% 83.3%
3630007 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.50 31.0 2.86e-01 73.4% 44.5%
D2 high residues 116-225
PDB
Domain cluster: rep: IMGVR_UViG_3300010332_000231-3300010332-Ga0116200_1000007423__D8-88
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 42.0 4.57e-01 96.4% 77.2%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 34.0 3.36e-01 97.3% 56.4%
7sf7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 48.0 3.59e-01 100.0% 69.7%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.50 30.0 3.25e-01 100.0% 69.5%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031352 6026.1.1.43 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › DUF1024 0.72 40.0 4.59e-01 70.0% 72.6%
3701833 5060.1.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 0.65 34.0 3.44e-01 96.4% 50.0%
4031085 3826.1.1.79 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › DUF1024 0.64 38.0 4.53e-01 84.5% 85.9%
3649913 5050.1.1.58 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › NFD4_C 0.62 39.0 3.37e-01 99.1% 40.0%
4500042 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.55 44.0 2.89e-01 85.5% 54.7%
3719395 6110.1.1.1 ↗ alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 0.54 40.0 2.75e-01 77.3% 31.3%
3652035 601.16.1.8 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › DUF1218 0.53 37.0 3.17e-01 70.9% 88.6%
4987009 3837.1.1.1 ↗ alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 0.52 37.0 3.33e-01 80.9% 53.3%
5044090 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.52 36.0 3.13e-01 70.0% 80.0%
3602379 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.52 45.0 3.26e-01 100.0% 66.0%
4013459 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 44.0 3.06e-01 100.0% 93.2%
3190705 2004.1.1.433 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.50 38.0 2.39e-01 80.0% 52.9%