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WAE39479.1

Arc-Vir

OP880252__WAE39479.1__LDLAKGPJ-00055__00055

Identity

Accession:
OP880252 ↗
Protein ID:
WAE39479.1 ↗
Kingdom:
archaea

Quality

91.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nakonvirales› Ekchuahviridae› Kukulkanvirus› Methanophagales_virus_GBV301

TaxID: 2999280

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 36-237
PDB
Domain cluster: rep: OP830906.1__WBF78058.1__MEP401_gp05__00005__D296-546
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r8gA00 3.30.590.20 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › 0.71 60.0 4.99e-01 90.6% 88.6%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 27.0 4.42e-01 73.8% 100.0%
2ia0B02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.68 31.0 4.31e-01 73.3% 86.9%
2efpA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.66 32.0 4.38e-01 73.3% 91.8%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.65 27.0 4.21e-01 73.3% 100.0%
2dbbA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.65 31.0 4.37e-01 74.3% 96.8%
2gqqA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.63 29.0 4.20e-01 74.3% 98.8%
2ca9A02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.63 29.0 4.23e-01 71.8% 97.8%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.63 30.0 4.24e-01 70.3% 95.7%
1yqhA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 31.0 4.17e-01 71.3% 90.4%
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.62 29.0 3.93e-01 87.6% 82.4%
4f67A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 30.0 4.05e-01 71.3% 85.8%
4dezA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.61 32.0 4.35e-01 81.2% 100.0%
1cc8A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 24.0 3.72e-01 74.3% 100.0%
2b4vA03 3.30.70.1970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 29.0 4.00e-01 86.6% 93.9%
2lxfA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 28.0 3.54e-01 72.8% 72.7%
6lpnA04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 30.0 4.10e-01 82.2% 100.0%
3o1lB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 28.0 3.99e-01 76.2% 100.0%
2f5gA00 3.30.70.1290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like 0.59 28.0 3.45e-01 79.7% 68.5%
2hiyA01 3.30.70.1280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SP0830-like domains 0.58 28.0 3.93e-01 70.8% 98.9%
5wm1A02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.58 33.0 4.27e-01 85.6% 100.0%
2n8lA00 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.58 44.0 4.59e-01 87.1% 83.8%
2lqjA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 28.0 3.95e-01 71.3% 98.9%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.56 39.0 4.22e-01 93.1% 83.8%
4g6tA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 35.0 4.30e-01 77.7% 98.4%
4aqcB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 27.0 3.59e-01 80.7% 89.6%
3amjB02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 33.0 3.37e-01 90.1% 59.1%
1z2zA02 3.30.70.3160 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 23.0 3.29e-01 90.1% 82.2%
2cqpA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 26.0 3.51e-01 87.1% 86.7%
1vk3A04 3.30.70.1670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formylglycinamide ribonucleotide amidotransferase, C-terminal domain 0.54 26.0 3.81e-01 74.3% 99.0%
1cqmA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.54 27.0 3.73e-01 72.3% 98.0%
3amiA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.54 33.0 3.36e-01 90.1% 60.8%
4nnzA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.53 33.0 3.33e-01 89.6% 61.6%
1ea0A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 44.0 3.51e-01 94.1% 83.1%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5062185 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.75 34.0 5.14e-01 71.3% 98.9%
5029123 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.73 33.0 4.86e-01 72.3% 94.4%
5033229 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.72 32.0 4.77e-01 73.8% 94.4%
4942008 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.71 32.0 4.80e-01 73.8% 96.7%
5030107 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.70 33.0 4.79e-01 73.8% 97.8%
4090827 321.1.1.7 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.70 60.0 4.87e-01 90.6% 88.9%
5056140 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.70 32.0 4.78e-01 73.8% 97.8%
5060415 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.70 34.0 4.90e-01 73.3% 100.0%
5029117 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.69 34.0 4.58e-01 72.3% 87.3%
4130739 304.4.1.1 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.68 32.0 4.60e-01 73.3% 97.8%
4961378 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.68 32.0 4.53e-01 73.3% 96.7%
3164749 304.4.1.1 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.68 31.0 4.50e-01 72.3% 95.6%
4416349 304.162.1.1 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.67 29.0 4.47e-01 73.8% 100.0%
3265799 304.19.1.3 ↗ a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › PF30773 0.66 28.0 4.42e-01 77.2% 100.0%
5028999 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.66 32.0 4.39e-01 73.3% 90.0%
4189792 304.4.1.1 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.66 32.0 4.33e-01 72.8% 89.0%
5028997 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.66 32.0 4.44e-01 73.3% 94.7%
4931771 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.66 32.0 4.36e-01 74.3% 91.0%
3381288 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.66 29.0 4.33e-01 73.3% 97.6%
5031028 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.65 33.0 4.37e-01 73.8% 88.2%
3962434 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.65 31.0 4.30e-01 74.3% 92.6%
3974171 304.4.1.1 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.65 31.0 4.39e-01 72.3% 97.8%
3623911 304.7.1.1 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.65 30.0 4.27e-01 71.8% 91.6%
4944621 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.65 31.0 3.79e-01 73.8% 69.6%
4946289 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.65 30.0 4.34e-01 72.8% 96.7%
5055913 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.64 33.0 4.30e-01 73.3% 88.2%
4616494 304.162.1.1 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.64 28.0 4.24e-01 73.8% 100.0%
5049194 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.64 29.0 4.18e-01 70.3% 96.5%
3288175 304.4.1.1 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.64 31.0 4.31e-01 74.3% 95.8%
3286853 304.4.1.3 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII 0.64 28.0 4.19e-01 73.3% 100.0%
4978147 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.64 30.0 4.25e-01 73.8% 96.7%
1759952 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.63 30.0 4.11e-01 84.2% 88.2%
4939299 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.63 27.0 3.89e-01 72.8% 86.7%
5006368 304.4.1.20 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg2 0.62 28.0 4.11e-01 70.8% 97.6%
4979746 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.62 30.0 4.08e-01 73.8% 90.0%
3200703 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.62 28.0 4.21e-01 74.8% 100.0%
4464525 304.8.1.8 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.61 28.0 4.10e-01 71.8% 98.8%
3617015 304.120.1.12 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › PF26955 0.61 28.0 4.14e-01 77.2% 100.0%
5072282 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 27.0 3.84e-01 74.3% 88.9%
5007627 304.8.1.21 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.61 27.0 3.93e-01 74.3% 97.5%
4980062 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.61 29.0 3.96e-01 72.8% 90.5%
3721769 304.8.1.22 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT 0.61 27.0 3.73e-01 76.2% 82.0%
5047234 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.61 30.0 4.10e-01 73.3% 95.8%
3726512 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 26.0 3.89e-01 78.7% 96.2%
5021042 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.60 27.0 4.04e-01 72.8% 100.0%
3802360 304.19.1.1 ↗ a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.60 31.0 3.95e-01 71.8% 85.2%
5042195 304.19.1.1 ↗ a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.59 29.0 3.96e-01 74.8% 95.7%
5066741 304.8.1.21 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.59 27.0 3.78e-01 74.3% 95.3%
3972123 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.59 30.0 4.00e-01 74.8% 92.4%
4647263 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.59 24.0 3.64e-01 78.2% 93.6%
4965406 304.8.1.21 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.59 26.0 3.85e-01 75.2% 100.0%
5046686 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 26.0 3.86e-01 77.2% 100.0%
3578563 304.126.1.2 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V-ATPase_C 0.58 28.0 3.65e-01 77.7% 83.8%
4992138 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.58 28.0 3.85e-01 75.2% 96.7%
4098328 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.57 30.0 3.97e-01 74.8% 92.7%
3989409 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.55 38.0 4.39e-01 90.6% 100.0%
3376944 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 27.0 3.62e-01 72.3% 91.4%
3804539 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 27.0 3.51e-01 75.7% 87.3%
3652921 309.1.1.4 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C 0.52 33.0 3.17e-01 91.6% 53.2%
4973396 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.52 34.0 3.57e-01 76.2% 72.2%