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WAE39480.1

Arc-Vir

OP880252__WAE39480.1__LDLAKGPJ-00056__00056

Identity

Accession:
OP880252 ↗
Protein ID:
WAE39480.1 ↗
Kingdom:
archaea

Quality

83.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nakonvirales› Ekchuahviridae› Kukulkanvirus› Methanophagales_virus_GBV301

TaxID: 2999280

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-71
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.73 58.0 4.62e-01 85.3% 95.4%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.73 64.0 4.75e-01 100.0% 55.4%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.68 40.0 2.97e-01 75.0% 23.9%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.68 52.0 4.25e-01 85.3% 92.5%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.64 50.0 5.01e-01 85.3% 100.0%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 44.0 3.76e-01 70.6% 63.9%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 42.0 4.34e-01 73.5% 74.2%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.60 46.0 3.29e-01 83.8% 51.0%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 46.0 3.74e-01 88.2% 96.5%
3e5zA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 53.0 3.48e-01 100.0% 85.5%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 52.0 3.44e-01 100.0% 84.2%
5m8cB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 44.0 2.84e-01 80.9% 26.6%
6z46V01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.59 45.0 3.32e-01 82.4% 74.2%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.58 45.0 3.70e-01 83.8% 46.0%
1cvrA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 37.0 3.49e-01 88.2% 53.0%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 38.0 4.41e-01 77.9% 100.0%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 42.0 3.71e-01 80.9% 68.5%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 51.0 3.29e-01 100.0% 86.4%
2qc5A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 51.0 3.32e-01 100.0% 90.3%
3cnwA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 41.0 3.31e-01 77.9% 77.3%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 42.0 3.78e-01 82.4% 58.6%
6muwB00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 43.0 3.03e-01 83.8% 61.6%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.56 43.0 3.23e-01 83.8% 52.2%
3kfvA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 44.0 4.02e-01 91.2% 94.0%
2vseA05 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 44.0 3.55e-01 88.2% 97.9%
2b5nB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 47.0 3.13e-01 100.0% 89.4%
2lqoA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 35.0 3.27e-01 85.3% 48.9%
3k8rA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.55 39.0 3.93e-01 100.0% 73.5%
2x8nA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.55 39.0 3.48e-01 100.0% 52.6%
1tfkA00 3.10.450.200 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 3.67e-01 82.4% 58.5%
1aogA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 38.0 3.12e-01 73.5% 95.9%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.54 41.0 3.33e-01 85.3% 68.8%
7sf2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.63e-01 95.6% 58.1%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.85e-01 86.8% 83.9%
4g59C02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.54 46.0 3.60e-01 100.0% 90.5%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 43.0 3.42e-01 100.0% 86.4%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 3.91e-01 83.8% 78.8%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 41.0 4.15e-01 82.4% 90.9%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 2.90e-01 98.5% 92.2%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.53 34.0 3.83e-01 80.9% 95.8%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.53 31.0 3.66e-01 97.1% 95.1%
1q7fB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 43.0 2.95e-01 97.1% 68.8%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 3.72e-01 82.4% 73.9%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 39.0 3.87e-01 79.4% 78.6%
8f66A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 41.0 3.03e-01 91.2% 73.3%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 41.0 4.15e-01 86.8% 100.0%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 4.04e-01 89.7% 98.2%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.52 36.0 3.39e-01 75.0% 91.0%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 4.04e-01 92.6% 98.3%
1z3aA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 43.0 3.43e-01 100.0% 78.2%
1cdwA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.51 40.0 3.69e-01 98.5% 66.3%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 39.0 3.70e-01 85.3% 77.9%
4bfeC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.67e-01 94.1% 64.2%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 39.0 4.01e-01 86.8% 100.0%
4geqB00 3.30.160.430 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 32.0 3.35e-01 77.9% 74.1%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1320090 206.1.1.24 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › HipA_C,Couple_hipA 0.75 60.0 3.64e-01 86.8% 24.7%
2576226 4.34.1.1 ↗ beta barrels › SH3 › Tas1 immunity protein PA14_01130 › Tas1 immunity protein PA14_01130 › Tis1_ImmP 0.72 56.0 5.45e-01 92.6% 75.0%
4009736 206.1.1.23 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › HipA_C 0.72 57.0 3.53e-01 85.3% 27.8%
4494129 880.1.1.1 ↗ a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.72 59.0 3.52e-01 89.7% 91.9%
4809246 206.1.1.68 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Couple_hipA 0.72 57.0 4.96e-01 85.3% 100.0%
5074996 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.67 47.0 3.53e-01 73.5% 54.1%
4948490 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 40.0 3.91e-01 95.6% 54.7%
4195918 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.67 47.0 3.21e-01 75.0% 30.6%
3691059 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.66 49.0 3.61e-01 77.9% 79.4%
3595133 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 47.0 2.98e-01 76.5% 23.8%
3992786 11.1.1.1176 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-prop_Rol-3 0.65 45.0 2.92e-01 77.9% 16.1%
3260943 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 47.0 4.71e-01 82.4% 74.3%
5027344 1170.1.1.0 ↗ beta barrels › IL8-related › IL8-related › IL8 0.64 41.0 4.40e-01 73.5% 80.0%
3952459 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 56.0 4.28e-01 100.0% 50.9%
3924523 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.64 46.0 3.23e-01 76.5% 66.2%
3366119 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 44.0 3.08e-01 73.5% 31.1%
4998329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 44.0 4.83e-01 88.2% 92.7%
3581945 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.63 40.0 4.22e-01 70.6% 73.3%
4945655 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 48.0 4.26e-01 85.3% 58.0%
3323590 292.2.1.17 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › LOR 0.61 43.0 3.66e-01 73.5% 66.4%
3703970 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.32e-01 89.7% 76.2%
3790336 5.1.3.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_Rol-3 0.61 49.0 3.38e-01 88.2% 73.2%
3765914 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.60 47.0 3.81e-01 86.8% 67.2%
3994170 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 44.0 3.18e-01 80.9% 27.1%
5072494 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.59 46.0 3.41e-01 83.8% 61.2%
4982561 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.59 38.0 4.49e-01 76.5% 100.0%
3575278 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.59 44.0 3.41e-01 80.9% 35.5%
3583317 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 49.0 3.76e-01 94.1% 59.4%
3800040 5.1.4.422 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Rol-3 0.59 49.0 3.38e-01 91.2% 76.0%
5075159 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.58 45.0 3.41e-01 83.8% 44.2%
3500306 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 42.0 3.01e-01 77.9% 47.0%
3790425 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 48.0 3.66e-01 94.1% 55.2%
4147366 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.57 39.0 4.36e-01 86.8% 100.0%
3406876 5.1.12.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.57 49.0 3.23e-01 97.1% 92.1%
1556781 3146.1.1.2 ↗ a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_UL1 0.56 43.0 3.50e-01 83.8% 62.9%
5026680 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.56 38.0 4.03e-01 82.4% 81.7%
3511278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 40.0 4.04e-01 85.3% 77.1%
3328359 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.56 41.0 3.08e-01 82.4% 70.8%
4957377 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.56 39.0 4.00e-01 80.9% 79.4%
5001324 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 43.0 3.73e-01 83.8% 71.4%
3719666 10.1.1.56 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.55 47.0 3.59e-01 100.0% 62.3%
4027492 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 3.00e-01 89.7% 76.7%
4147290 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.55 40.0 4.14e-01 86.8% 81.5%
4949848 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.55 39.0 4.21e-01 88.2% 92.7%
3621818 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.55 38.0 4.29e-01 80.9% 100.0%
3509392 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 47.0 3.68e-01 100.0% 75.6%
3267345 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.55 39.0 4.21e-01 79.4% 92.7%
3242234 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 49.0 2.89e-01 100.0% 26.5%
3998421 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 40.0 4.09e-01 100.0% 81.5%
3416070 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 43.0 2.80e-01 92.6% 93.2%
3879656 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.54 47.0 3.49e-01 100.0% 74.1%
3403199 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.53 41.0 3.48e-01 97.1% 50.9%
4062087 1023.1.1.1 ↗ beta barrels › Cell division protein ZapC N-terminal domain › Cell division protein ZapC N-terminal domain › Cell division protein ZapC N-terminal domain › ZapC_N 0.53 35.0 3.32e-01 100.0% 55.3%
4300919 1023.1.1.1 ↗ beta barrels › Cell division protein ZapC N-terminal domain › Cell division protein ZapC N-terminal domain › Cell division protein ZapC N-terminal domain › ZapC_N 0.53 35.0 3.24e-01 100.0% 52.2%
2561577 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.52 39.0 4.10e-01 80.9% 91.8%
3672390 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.52 41.0 3.47e-01 97.1% 52.7%
3244907 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 3.83e-01 94.1% 84.4%
3779830 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.50 38.0 3.51e-01 82.4% 64.4%
3510576 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.50 40.0 3.80e-01 97.1% 72.5%
3480534 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 34.0 2.88e-01 72.1% 63.3%