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WAE39483.1

Arc-Vir

OP880252__WAE39483.1__LDLAKGPJ-00059__00059

Identity

Accession:: OP880252 ↗
Protein ID:: WAE39483.1 ↗
Kingdom:: archaea

Quality

89.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nakonvirales› Ekchuahviridae› Kukulkanvirus› Methanophagales_virus_GBV301

TaxID: 2999280

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-67

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1lb3A00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.65	38.0	2.76e-01	87.7%	22.8%
2ja2A04	1.10.8.70	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1	0.65	44.0	4.84e-01	100.0%	90.4%
2cvzA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.60	48.0	3.83e-01	87.7%	84.1%
4f55A01	1.10.10.2520	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Cell wall hydrolase SleB, domain 1	0.57	43.0	4.10e-01	84.6%	100.0%
2p1aB01	1.20.120.450	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain	0.57	39.0	3.09e-01	72.3%	66.4%
3i3tA00	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.56	39.0	2.58e-01	73.8%	89.8%
3f51C00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.55	38.0	3.48e-01	72.3%	85.6%
4dxwA02	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.52	38.0	3.31e-01	80.0%	54.5%
3gruA02	1.10.8.100	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain	0.52	41.0	3.84e-01	92.3%	95.3%
3bz6A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	43.0	3.97e-01	100.0%	86.7%
3lwjA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.50	36.0	2.66e-01	100.0%	26.4%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3268785	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.56	43.0	3.50e-01	89.2%	44.0%
3479514	101.1.2.318 ↗	alpha arrays › HTH › HTH › winged helix domain › HSD3	0.55	34.0	3.40e-01	78.5%	58.6%
3787156	109.4.1.109 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1	0.55	39.0	2.19e-01	73.8%	42.5%
3783885	1128.1.1.2 ↗	alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2	0.53	38.0	3.60e-01	90.8%	64.0%
3935995	101.1.2.127 ↗	alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8	0.52	38.0	3.66e-01	100.0%	68.0%
4979490	101.1.2.101 ↗	alpha arrays › HTH › HTH › winged helix domain › Cdc6_C	0.51	42.0	3.60e-01	98.5%	66.7%
1519214	101.1.2.101 ↗	alpha arrays › HTH › HTH › winged helix domain › Cdc6_C	0.51	40.0	3.62e-01	93.8%	74.5%
3497894	101.1.2.374 ↗	alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD	0.51	40.0	3.82e-01	92.3%	75.9%
4022486	101.1.2.374 ↗	alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD	0.51	40.0	3.72e-01	92.3%	78.9%
3744259	101.1.2.154 ↗	alpha arrays › HTH › HTH › winged helix domain › CDT1_C	0.50	42.0	3.48e-01	100.0%	62.3%