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WAE39486.1

Arc-Vir

OP880252__WAE39486.1__LDLAKGPJ-00062__00062

Identity

Accession:
OP880252 ↗
Protein ID:
WAE39486.1 ↗
Kingdom:
archaea

Quality

92.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nakonvirales› Ekchuahviridae› Kukulkanvirus› Methanophagales_virus_GBV301

TaxID: 2999280

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-80
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.64 40.0 4.67e-01 82.9% 98.0%
4p0dA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 41.0 3.56e-01 100.0% 44.3%
3irzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 39.0 3.59e-01 100.0% 49.5%
2h0eB00 2.60.40.180 Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain 0.59 41.0 3.63e-01 100.0% 49.6%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 38.0 4.06e-01 82.9% 78.1%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.58 49.0 4.03e-01 94.7% 62.8%
2kuqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 43.0 3.49e-01 80.3% 48.4%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.57 51.0 4.10e-01 100.0% 80.7%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.69e-01 89.5% 94.3%
2x5pA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 41.0 3.69e-01 100.0% 56.7%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.55 48.0 3.41e-01 97.4% 37.6%
5ahoA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 39.0 2.97e-01 75.0% 36.1%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 4.14e-01 97.4% 100.0%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 43.0 3.22e-01 90.8% 100.0%
6pwkA02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.53 39.0 2.79e-01 78.9% 91.8%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.87e-01 93.4% 80.6%
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 39.0 3.66e-01 80.3% 97.9%
2yocA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.78e-01 97.4% 63.9%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 37.0 4.04e-01 78.9% 98.3%
3ll3B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 37.0 2.65e-01 78.9% 31.8%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 44.0 3.71e-01 100.0% 92.4%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4117297 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 58.0 6.02e-01 94.7% 97.1%
5042578 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.67 42.0 4.31e-01 100.0% 65.3%
4267139 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 39.0 4.40e-01 84.2% 82.5%
3220929 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 54.0 5.48e-01 100.0% 97.3%
3574784 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 44.0 3.93e-01 88.2% 53.6%
5024264 3613.1.1.0 ↗ beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.59 38.0 3.91e-01 94.7% 68.0%
3983510 219.1.1.152 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF26124 0.59 46.0 3.65e-01 86.8% 55.2%
3936407 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 40.0 3.84e-01 100.0% 61.1%
3818610 4.1.1.324 ↗ beta barrels › SH3 › SH3 › SH3 › Nodulin_C 0.58 45.0 4.29e-01 85.5% 100.0%
3932647 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 45.0 4.33e-01 89.5% 75.3%
3924975 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.57 45.0 4.46e-01 89.5% 81.2%
3327160 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.57 49.0 4.00e-01 100.0% 67.7%
4001653 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.57 50.0 3.83e-01 98.7% 60.0%
3454181 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.57 50.0 3.83e-01 98.7% 75.0%
3309829 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 49.0 3.95e-01 100.0% 65.6%
4929550 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.57 43.0 4.48e-01 89.5% 91.4%
3432441 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.57 46.0 3.28e-01 90.8% 42.7%
3940730 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 43.0 3.98e-01 89.5% 64.2%
3683487 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.56 48.0 3.72e-01 97.4% 52.0%
4060574 1.1.7.70 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II 0.56 43.0 4.40e-01 86.8% 84.0%
3501834 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 48.0 4.65e-01 96.1% 97.6%
3625963 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.56 45.0 4.18e-01 98.7% 69.5%
3653487 4.1.1.324 ↗ beta barrels › SH3 › SH3 › SH3 › Nodulin_C 0.55 44.0 4.15e-01 85.5% 96.7%
5083463 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 41.0 4.02e-01 100.0% 71.8%
3490245 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 48.0 4.53e-01 97.4% 92.2%
5050226 3613.1.1.0 ↗ beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.55 40.0 3.69e-01 89.5% 59.0%
4008273 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 40.0 4.11e-01 88.2% 84.3%
3927559 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 39.0 3.50e-01 92.1% 54.3%
3690989 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 49.0 3.70e-01 100.0% 69.4%
4300449 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.54 37.0 3.97e-01 80.3% 83.1%
3642325 9.1.1.29 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BFA1_C 0.54 48.0 3.80e-01 98.7% 86.9%
3503759 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.54 37.0 2.66e-01 73.7% 75.8%
4971532 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 38.0 3.98e-01 84.2% 81.4%
3358147 220.1.1.241 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EPL1 0.54 45.0 3.17e-01 94.7% 32.4%
3946522 9.1.1.36 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3833 0.53 46.0 3.72e-01 100.0% 89.0%
3765005 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 38.0 2.28e-01 78.9% 11.4%
4328639 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.52 41.0 3.84e-01 90.8% 68.4%
4027241 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.52 42.0 3.36e-01 89.5% 44.5%
3666672 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 3.76e-01 92.1% 69.1%
3252995 12.3.1.46 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.51 43.0 3.19e-01 98.7% 50.7%