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WAE39500.1

Arc-Vir

OP880252__WAE39500.1__LDLAKGPJ-00076__00076

Identity

Accession:
OP880252 ↗
Protein ID:
WAE39500.1 ↗
Kingdom:
archaea

Quality

95.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nakonvirales› Ekchuahviridae› Kukulkanvirus› Methanophagales_virus_GBV301

TaxID: 2999280

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-114
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00192__D5-108
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.63 42.0 3.97e-01 100.0% 55.5%
1earA02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.61 30.0 3.66e-01 99.1% 73.9%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.60 43.0 3.74e-01 100.0% 49.4%
2jxpA01 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.59 41.0 3.85e-01 100.0% 56.7%
1jkxA00 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.58 42.0 3.37e-01 100.0% 39.2%
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.56 41.0 4.41e-01 99.1% 89.6%
1t4aA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.56 35.0 4.03e-01 84.7% 88.6%
1qduB00 3.30.70.1470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Caspase-like 0.54 26.0 2.93e-01 77.5% 56.8%
1pu1A00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.54 29.0 3.15e-01 92.8% 60.4%
1ibcB00 3.30.70.1470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Caspase-like 0.54 27.0 3.04e-01 80.2% 59.1%
6uv8A01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 42.0 3.57e-01 94.6% 51.4%
1pyoB00 3.30.70.1470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Caspase-like 0.53 27.0 2.86e-01 81.1% 52.0%
4lm6A00 3.90.510.10 Alpha Beta › Alpha-Beta Complex › Cryptophytan Phycoerythrin (Alpha-1 Chain); Chain A › Phycoerythrin alpha chain 0.53 26.0 3.30e-01 73.0% 80.6%
1vs5I00 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 32.0 3.06e-01 94.6% 53.5%
1ek9A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.51 38.0 2.56e-01 77.5% 68.2%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.51 39.0 3.05e-01 90.1% 38.1%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4976198 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.64 35.0 3.89e-01 92.8% 68.2%
4308194 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.63 38.0 4.25e-01 100.0% 77.6%
3579353 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.59 33.0 3.25e-01 89.2% 50.0%
4827615 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.58 41.0 3.87e-01 99.1% 61.2%
4048404 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.55 41.0 3.14e-01 100.0% 32.8%
5037134 212.1.1.7 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › IGPD 0.55 35.0 3.89e-01 90.1% 81.1%
4342596 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.54 42.0 3.28e-01 99.1% 38.3%
4929130 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.54 36.0 3.56e-01 98.2% 63.0%
3828420 7524.1.1.1 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.54 38.0 2.76e-01 73.0% 51.4%
3838810 5085.1.1.1 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.54 40.0 2.76e-01 77.5% 72.7%
4437629 212.1.1.7 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › IGPD 0.53 35.0 3.82e-01 91.0% 82.2%
4469118 212.1.1.7 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › IGPD 0.53 35.0 3.86e-01 90.1% 85.9%
4116373 5085.1.1.1 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.53 38.0 2.59e-01 76.6% 63.6%
3967554 5085.1.1.1 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.52 38.0 2.51e-01 75.7% 58.5%
3386397 5085.1.1.1 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.51 38.0 2.59e-01 77.5% 70.5%
3968014 5085.1.1.1 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.50 37.0 2.51e-01 76.6% 64.8%
3482747 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.50 34.0 3.34e-01 98.2% 63.3%