←Back to structures
WAE39592.1
Arc-VirOP880253__WAE39592.1__FHOMOCKG-00064__00064
Identity
- Accession:
- OP880253 ↗
- Protein ID:
- WAE39592.1 ↗
- Kingdom:
- archaea
Quality
72.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Nakonvirales›
Ekchuahviridae›
Kukulkanvirus›
Methanophagales_virus_GBV302
TaxID: 2999281
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-150
Domain cluster:
rep: KJ746502.1__AID18371.1__PPF1_58__00058__D3-160
D2
medium
residues 240-337_404-434
Domain cluster:
rep: term6_stool_scaffold_5_prodigal-single.1__X__X__00042__D7-116_441-464
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07591.16 best | PT-HINT | 32.5 | 1.30e-07 | 90.7% | 68.6% |
D3
medium
residues 338-403
Domain cluster:
representative
D4
medium
residues 435-580
Domain cluster:
rep: IMGVR_UViG_3300025471_000009-3300025471-Ga0209508_100072430__D798-908_928-940
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2krbA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 24.0 | 3.13e-01 | 98.6% | 70.4% |
| 4mt1A06 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.50 | 24.0 | 2.85e-01 | 99.3% | 61.4% |
D5
medium
residues 581-681
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3uxuA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.59 | 29.0 | 2.54e-01 | 95.0% | 27.7% |
| 1ae2A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 32.0 | 3.47e-01 | 80.2% | 62.8% |
| 5aq1A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 38.0 | 2.77e-01 | 75.2% | 41.6% |
| 1d3bB00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 36.0 | 3.90e-01 | 74.3% | 85.2% |
| 1dpgA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 37.0 | 2.60e-01 | 73.3% | 65.4% |
| 1yemB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.51 | 37.0 | 3.17e-01 | 76.2% | 79.5% |
| 3ci0J02 | 2.10.70.20 | Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains | 0.51 | 25.0 | 3.40e-01 | 86.1% | 94.0% |
| 3cqnB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 37.0 | 3.21e-01 | 77.2% | 91.3% |
| 6l4cA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 41.0 | 3.39e-01 | 89.1% | 92.9% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5008548 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 33.0 | 3.44e-01 | 76.2% | 56.8% |
| 3279764 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 30.0 | 3.55e-01 | 76.2% | 70.0% |
| 3674239 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.55 | 35.0 | 3.50e-01 | 81.2% | 61.9% |
| 3959610 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.54 | 33.0 | 2.97e-01 | 77.2% | 45.1% |
| 3412288 | 298.1.1.6 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › G6PD_C | 0.54 | 40.0 | 2.79e-01 | 77.2% | 45.5% |
| 3621025 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.53 | 32.0 | 3.89e-01 | 91.1% | 93.8% |
| 3565146 | 109.4.1.816 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RALGAPB_N | 0.53 | 47.0 | 2.72e-01 | 100.0% | 14.5% |
| 3194506 | 220.1.1.201 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7493 | 0.52 | 32.0 | 3.16e-01 | 81.2% | 56.4% |
| 4569359 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.51 | 33.0 | 3.67e-01 | 75.2% | 80.0% |
| 3254982 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.50 | 31.0 | 3.66e-01 | 91.1% | 91.4% |