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WAE39614.1

Arc-Vir

OP880253__WAE39614.1__FHOMOCKG-00086__00086

Identity

Accession:
OP880253 ↗
Protein ID:
WAE39614.1 ↗
Kingdom:
archaea

Quality

71.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nakonvirales› Ekchuahviridae› Kukulkanvirus› Methanophagales_virus_GBV302

TaxID: 2999281

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-114
PDB
Domain cluster: rep: NC_052650__YP_009981828.1__JR051-gp22__00022__D4-23_42-109
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.69 63.0 5.54e-01 100.0% 77.2%
4bfeA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 36.0 4.09e-01 91.9% 67.9%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.68 50.0 5.27e-01 100.0% 85.9%
3c19A01 3.30.70.1380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transcriptional regulatory protein pf0864 domain like 0.66 37.0 3.92e-01 73.9% 60.6%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.66 49.0 4.78e-01 100.0% 70.2%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.65 42.0 4.39e-01 96.4% 70.2%
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 37.0 4.04e-01 91.9% 67.8%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 40.0 4.36e-01 83.8% 76.7%
7k0xA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 35.0 4.12e-01 92.8% 76.9%
4v19W00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.63 50.0 4.38e-01 84.7% 80.7%
4frwA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 36.0 3.80e-01 91.0% 62.5%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.63 50.0 5.01e-01 100.0% 83.2%
4bbyA05 3.30.300.330 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.63 39.0 4.04e-01 76.6% 64.8%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.62 56.0 4.57e-01 100.0% 77.1%
4i0kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 37.0 3.93e-01 92.8% 67.4%
6x4tA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 35.0 3.88e-01 79.3% 70.6%
4ushA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 37.0 3.83e-01 100.0% 63.1%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.61 54.0 5.09e-01 100.0% 91.9%
4ofyD02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 38.0 3.91e-01 93.7% 66.4%
4f0qD01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.59 53.0 4.09e-01 100.0% 56.9%
3ne5C02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.59 40.0 4.13e-01 95.5% 75.5%
4fomA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 36.0 3.79e-01 92.8% 68.7%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 36.0 3.97e-01 87.4% 76.4%
1s28A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 34.0 3.31e-01 82.0% 49.2%
1fp5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 36.0 3.74e-01 82.0% 68.0%
3u83A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 35.0 3.72e-01 91.9% 68.3%
3o3uN03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 37.0 3.72e-01 82.0% 64.9%
2w59A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 35.0 3.72e-01 87.4% 69.0%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.56 36.0 3.90e-01 82.9% 77.7%
1vwxP00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.56 42.0 3.82e-01 80.2% 98.0%
3g2fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 36.0 3.98e-01 100.0% 83.9%
1vq8R00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.55 43.0 3.91e-01 83.8% 98.7%
1vs3A02 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.55 39.0 3.58e-01 73.9% 60.4%
4wgkA02 2.60.40.2300 Mainly Beta › Sandwich › Immunoglobulin-like › Neutral/alkaline non-lysosomal ceramidase, C-terminal domain 0.54 40.0 3.75e-01 92.8% 63.9%
2petA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.82e-01 92.8% 70.7%
2h4pA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.54 48.0 3.71e-01 99.1% 80.6%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.54 39.0 4.35e-01 100.0% 97.7%
3o4oB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.69e-01 91.9% 70.6%
2mj6A00 3.30.450.250 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 30.0 3.25e-01 87.4% 66.7%
4j37A02 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.52 38.0 3.17e-01 75.7% 48.4%
6ofsA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 36.0 3.09e-01 79.3% 42.9%
1vzyA01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.52 40.0 3.16e-01 82.9% 75.6%
3a27A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 42.0 3.38e-01 88.3% 77.6%
2psoB02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 43.0 3.70e-01 91.0% 78.1%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4952909 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.81 57.0 5.92e-01 100.0% 77.1%
3667432 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.72 43.0 4.66e-01 92.8% 69.5%
3058416 1.1.5.39 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD 0.71 64.0 6.07e-01 100.0% 84.3%
4952629 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 57.0 5.94e-01 100.0% 95.0%
4607326 305.1.1.1 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.70 45.0 4.63e-01 92.8% 68.6%
4952430 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 56.0 5.64e-01 100.0% 87.3%
3896288 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.69 40.0 4.20e-01 92.8% 63.0%
2407461 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.68 51.0 4.83e-01 100.0% 66.4%
3604508 304.8.1.4 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.67 39.0 4.33e-01 79.3% 71.1%
4947614 304.130.1.1 ↗ a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.67 37.0 4.06e-01 73.9% 65.6%
3776086 306.10.1.5 ↗ a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 › PF31088 0.67 39.0 3.73e-01 91.0% 48.5%
4952429 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 53.0 5.61e-01 100.0% 94.0%
5050897 304.130.1.1 ↗ a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.67 36.0 4.09e-01 74.8% 68.2%
2642579 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.67 61.0 5.82e-01 100.0% 88.5%
4287081 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.67 50.0 4.87e-01 100.0% 70.4%
4929634 1.1.5.47 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.66 60.0 4.45e-01 100.0% 40.4%
3617304 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 41.0 4.13e-01 91.0% 62.7%
4189243 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.66 49.0 4.66e-01 100.0% 66.9%
None — 0.65 44.0 4.11e-01 89.2% 56.3%
4957560 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 59.0 5.64e-01 100.0% 91.5%
4944755 304.130.1.1 ↗ a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.64 36.0 3.97e-01 74.8% 67.8%
4640974 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.63 47.0 4.66e-01 100.0% 72.5%
1130316 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 40.0 4.30e-01 83.8% 76.9%
4538400 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.62 48.0 4.58e-01 100.0% 70.0%
3893006 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 41.0 4.26e-01 92.8% 72.4%
3970088 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 37.0 4.00e-01 83.8% 70.5%
3492449 256.1.1.9 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › YbjQ_3 0.61 39.0 4.70e-01 96.4% 97.3%
4379611 304.102.1.6 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.60 45.0 3.63e-01 80.2% 59.1%
404644 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.60 40.0 4.07e-01 90.1% 69.4%
3960516 304.102.1.0 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase 0.59 44.0 3.78e-01 80.2% 58.4%
3482575 256.1.1.0 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.59 38.0 4.51e-01 97.3% 96.0%
3972051 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 42.0 3.99e-01 95.5% 63.8%
3696144 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.58 44.0 2.53e-01 89.2% 8.7%
3883932 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.58 36.0 3.76e-01 91.0% 65.7%
224015 1.1.9.18 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › RE_AspBHI_N 0.58 52.0 3.97e-01 100.0% 56.4%
4034134 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.57 50.0 4.86e-01 100.0% 94.4%
3863526 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.56 37.0 3.67e-01 91.0% 62.6%
3723425 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 43.0 3.09e-01 91.0% 28.3%
3589403 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.55 49.0 4.82e-01 100.0% 91.7%
3602499 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.55 49.0 4.71e-01 100.0% 83.8%
5052852 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.55 49.0 4.11e-01 97.3% 85.3%
4032612 1.1.9.45 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3427 0.55 48.0 4.40e-01 100.0% 73.2%
3697909 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.55 39.0 3.27e-01 74.8% 74.4%
5022932 304.130.1.1 ↗ a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.54 33.0 3.63e-01 86.5% 76.5%
4988254 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.53 48.0 4.10e-01 100.0% 67.2%
3192615 868.1.1.8 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › SLS1_C 0.53 41.0 2.99e-01 83.8% 48.1%
4118093 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.53 47.0 4.24e-01 100.0% 74.8%
3472250 11.12.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.53 41.0 3.39e-01 92.8% 45.4%
3289880 11.1.1.223 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ceramidse_alk_C 0.52 39.0 3.73e-01 90.1% 68.5%
3838528 319.3.1.0 ↗ beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ 0.51 42.0 4.21e-01 91.0% 97.4%
5032446 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.50 37.0 3.87e-01 100.0% 84.0%
3499820 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.50 37.0 3.48e-01 91.0% 63.0%