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WAE39638.1

Arc-Vir

OP880254__WAE39638.1__NNKAGPMP-00002__00002

Identity

Accession:
OP880254 ↗
Protein ID:
WAE39638.1 ↗
Kingdom:
archaea

Quality

90.5 mean pLDDT

Taxonomy

Itzamnaviridae› Demiitzamnavirus› Methanophagales_virus_GBV303

TaxID: 2986514

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-81
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ke2A00 6.10.140.1860 Special › Helix non-globular › Helix Hairpins › 0.77 69.0 5.15e-01 100.0% 41.3%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.77 66.0 5.35e-01 94.9% 51.8%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.75 52.0 4.42e-01 72.2% 92.9%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.75 68.0 6.27e-01 100.0% 82.0%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.73 55.0 5.77e-01 83.5% 87.3%
2ckoA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.73 53.0 3.58e-01 75.9% 84.3%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.72 58.0 5.50e-01 87.3% 92.6%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 56.0 4.90e-01 91.1% 60.7%
3nz4B03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.65 45.0 4.09e-01 72.2% 61.5%
2fonA04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.59 45.0 3.82e-01 81.0% 92.2%
2ddhA04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 41.0 3.52e-01 81.0% 49.2%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937528 603.2.1.0 ↗ alpha bundles › STAT-like › STAT › STAT 0.81 74.0 5.63e-01 100.0% 45.7%
3497934 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.80 71.0 4.88e-01 94.9% 50.8%
3282043 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.80 67.0 6.58e-01 89.9% 84.7%
3215342 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.78 61.0 5.77e-01 88.6% 69.5%
4016635 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.74 58.0 5.41e-01 86.1% 67.0%
3824276 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.73 59.0 4.43e-01 84.8% 37.2%
3999236 622.1.1.1 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.71 51.0 4.56e-01 74.7% 55.2%
3627942 3755.4.1.1 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PI3K_P85_iSH2 0.71 67.0 4.95e-01 100.0% 44.6%
3996264 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.69 63.0 4.87e-01 100.0% 49.4%