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OP894077.1__WAX22503.1__HS5_25__00025

Bact-Vir

OP894077.1__WAX22503.1__HS5_25__00025

Identity

Accession:
OP894077 ↗
Kingdom:
phage

Quality

91.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aquingentivirus› Listeria_phage_HS5

TaxID: 3003559

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-48_83-141
PDB
Domain cluster: rep: NC_055840.1__YP_010107121.1__KNU98_gp022__00087__D316-449
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13539.12 best Peptidase_M15_4 56.6 4.30e-15 54.4% 83.8%
D2 medium residues 155-237
PDB
Domain cluster: rep: AJ312240.2__CAC85577.1__X__00023__D185-261
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18341.8 best PSA_CBD 97.0 6.40e-28 71.1% 100.0%
D3 medium residues 238-289
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18341.8 best PSA_CBD 50.4 2.30e-13 98.1% 83.3%
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xovA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.99 95.0 8.55e-01 100.0% 78.8%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 65.0 6.29e-01 100.0% 85.0%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 66.0 6.06e-01 100.0% 74.3%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 65.0 6.08e-01 100.0% 77.3%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 63.0 5.82e-01 100.0% 75.0%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 54.0 4.98e-01 100.0% 68.6%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 55.0 5.10e-01 100.0% 72.7%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 49.0 5.10e-01 100.0% 89.4%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 50.0 4.38e-01 100.0% 53.5%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 4.16e-01 100.0% 74.5%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 47.0 4.58e-01 100.0% 80.0%
4csqA00 2.30.29.190 Mainly Beta › Roll › PH-domain like › 0.59 47.0 3.76e-01 92.3% 79.6%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.59 40.0 4.15e-01 98.1% 79.2%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 48.0 3.67e-01 100.0% 64.9%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.56 42.0 4.26e-01 98.1% 86.3%
7zoiA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 44.0 3.54e-01 96.2% 100.0%
1tj6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 46.0 3.71e-01 100.0% 92.2%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 3.82e-01 100.0% 86.5%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 3.69e-01 100.0% 87.0%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 3.84e-01 100.0% 80.6%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.35e-01 100.0% 59.7%
3gvpA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 44.0 3.27e-01 98.1% 40.3%
1hcdA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 42.0 3.42e-01 96.2% 97.5%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.65e-01 100.0% 80.6%
5towB02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 44.0 3.26e-01 98.1% 40.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 3.58e-01 100.0% 55.8%
4k17B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.58e-01 100.0% 72.1%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.53 39.0 3.72e-01 100.0% 65.2%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.53 41.0 3.28e-01 94.2% 90.6%
3frnA01 3.10.129.70 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.53 42.0 3.21e-01 94.2% 91.4%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.33e-01 100.0% 59.1%
3fkuS02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.16e-01 80.8% 94.2%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.84e-01 100.0% 74.2%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 42.0 3.30e-01 100.0% 42.5%
2odhA02 3.30.70.3570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain 0.52 44.0 3.53e-01 100.0% 92.7%
4fflA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 40.0 2.63e-01 94.2% 34.0%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2841823 4.1.1.114 ↗ beta barrels › SH3 › SH3 › SH3 › PSA_CBD 0.89 81.0 7.90e-01 100.0% 94.6%
4550532 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.82 72.0 5.97e-01 100.0% 56.7%
5063004 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 71.0 6.62e-01 100.0% 78.5%
3840076 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.81 72.0 6.86e-01 100.0% 86.7%
4196229 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.80 71.0 6.47e-01 100.0% 74.3%
4446467 4.1.1.278 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.79 65.0 6.07e-01 100.0% 73.8%
3978088 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 69.0 6.39e-01 100.0% 78.5%
4650162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 67.0 6.24e-01 100.0% 78.5%
4520767 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.77 67.0 6.13e-01 100.0% 74.3%
1263586 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 67.0 6.03e-01 100.0% 72.2%
137916 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.77 65.0 6.13e-01 100.0% 78.5%
1263580 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.76 66.0 5.90e-01 100.0% 69.3%
3165077 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.74 65.0 5.93e-01 100.0% 74.3%
1545880 4.1.1.278 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.73 63.0 5.50e-01 100.0% 63.7%
3838574 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.73 62.0 6.10e-01 96.2% 90.9%
5039349 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 5.13e-01 100.0% 81.7%
3481726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 52.0 5.00e-01 100.0% 83.3%
4068333 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 43.0 4.11e-01 100.0% 61.5%
3930643 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 44.0 4.30e-01 100.0% 70.0%
3627353 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.59 48.0 3.69e-01 100.0% 63.6%
3713703 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 3.80e-01 100.0% 77.4%
2784372 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.57 42.0 4.08e-01 100.0% 69.8%
4083915 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 43.0 3.91e-01 100.0% 60.0%
3924744 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.57 46.0 3.54e-01 100.0% 63.6%
4147366 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.57 39.0 4.00e-01 100.0% 79.2%
3249355 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 46.0 3.80e-01 100.0% 77.3%
3354048 220.1.1.163 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7046 0.56 46.0 3.90e-01 100.0% 79.0%
3934126 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 44.0 4.23e-01 100.0% 76.7%
3921879 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 47.0 3.44e-01 100.0% 51.9%
3214129 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 3.67e-01 100.0% 68.8%
3718060 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 3.74e-01 100.0% 78.3%
3254788 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 46.0 3.51e-01 100.0% 57.2%
3594856 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.73e-01 100.0% 77.3%
5079209 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 46.0 3.47e-01 100.0% 54.5%
3903213 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 38.0 2.77e-01 98.1% 22.9%
3834491 220.1.1.163 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7046 0.55 44.0 3.78e-01 100.0% 83.0%
4218853 220.1.1.25 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CARM1 0.55 45.0 3.62e-01 100.0% 56.5%
3264236 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 45.0 3.77e-01 100.0% 78.0%
3216433 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.54 36.0 3.81e-01 94.2% 90.0%
3911252 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 3.80e-01 100.0% 82.1%
4882988 325.1.8.4 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › RRP40_N_mamm 0.53 36.0 3.13e-01 75.0% 40.7%
3398379 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 43.0 3.51e-01 100.0% 82.5%
3402573 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 43.0 3.52e-01 100.0% 72.2%
3708643 220.1.1.218 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26661 0.53 42.0 3.47e-01 100.0% 80.9%
4013462 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 39.0 2.49e-01 82.7% 64.1%
3888556 220.1.1.48 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Jak1_Phl 0.51 42.0 3.15e-01 100.0% 81.3%
3407234 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 40.0 2.58e-01 84.6% 85.2%
1178357 327.11.2.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.51 40.0 4.10e-01 96.2% 94.0%