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OP917831.1__WAX22959.1__X__00125
Bact-VirOP917831.1__WAX22959.1__X__00125
Identity
- Accession:
- OP917831 ↗
- Kingdom:
- phage
Quality
90.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Tefnutvirus›
Synechococcus_phage_S-M1
TaxID: 2994463
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-140
Domain cluster:
rep: KC292026__AGM11478.1__HGTV1-181__00148__D1-94_122-154
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dmuA00 | 3.40.600.20 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › Restriction endonuclease BglI | 0.74 | 68.0 | 5.27e-01 | 100.0% | 70.9% |
| 1b96A00 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.72 | 66.0 | 5.46e-01 | 98.6% | 70.9% |
| 1gefA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.68 | 44.0 | 4.74e-01 | 73.6% | 75.8% |
| 1ob8A00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.67 | 43.0 | 4.62e-01 | 72.1% | 75.6% |
| 1tx3D00 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.66 | 62.0 | 5.07e-01 | 100.0% | 71.7% |
| 2oaaB01 | 3.40.210.20 | Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › MvaI/BcnI restriction endonuclease, catalytic domain | 0.66 | 43.0 | 4.83e-01 | 100.0% | 85.2% |
| 2ezvA01 | 3.40.600.40 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › Type II restriction enzyme SfiI, multifunctional domain | 0.65 | 60.0 | 5.31e-01 | 100.0% | 71.1% |
| 2odhA01 | 3.40.210.20 | Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › MvaI/BcnI restriction endonuclease, catalytic domain | 0.63 | 44.0 | 4.67e-01 | 100.0% | 81.3% |
| 3ib5A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.60 | 44.0 | 3.38e-01 | 76.4% | 50.9% |
| 3h4rA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.59 | 45.0 | 3.80e-01 | 77.9% | 65.8% |
| 3hw5B00 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.58 | 44.0 | 4.05e-01 | 80.0% | 91.1% |
| 3bz6A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 29.0 | 3.65e-01 | 98.6% | 84.6% |
| 4hlbA00 | 3.30.70.2960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 31.0 | 3.66e-01 | 77.1% | 80.0% |
| 3mwmA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 27.0 | 3.55e-01 | 97.1% | 88.0% |
| 4narA01 | 3.40.50.11440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain | 0.54 | 48.0 | 3.90e-01 | 95.0% | 89.1% |
| 4ka7A01 | 1.10.1370.40 | Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › | 0.54 | 45.0 | 3.20e-01 | 88.6% | 32.0% |
| 4hn3A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.53 | 45.0 | 3.43e-01 | 92.9% | 59.0% |
| 1y79101 | 1.10.1370.40 | Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › | 0.52 | 44.0 | 3.13e-01 | 88.6% | 31.0% |
| 2qx2A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.52 | 35.0 | 2.76e-01 | 70.0% | 93.7% |
| 4ejoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 30.0 | 3.35e-01 | 92.1% | 72.3% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4973214 | 2008.1.1.210 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27324 | 0.75 | 64.0 | 5.87e-01 | 100.0% | 70.6% |
| 11006 | 2008.1.1.43 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Endonuc-EcoRV | 0.72 | 66.0 | 5.46e-01 | 98.6% | 70.9% |
| 3602325 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.72 | 47.0 | 4.99e-01 | 74.3% | 74.4% |
| 5048140 | 2008.1.1.43 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Endonuc-EcoRV | 0.72 | 66.0 | 5.75e-01 | 98.6% | 77.1% |
| 4142063 | 2008.1.1.179 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_ScaI | 0.70 | 66.0 | 5.93e-01 | 100.0% | 75.7% |
| 2142345 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.70 | 42.0 | 5.10e-01 | 71.4% | 91.4% |
| 3602814 | 2008.1.1.210 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27324 | 0.69 | 64.0 | 5.78e-01 | 100.0% | 83.2% |
| 11017 | 2008.1.1.42 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Endonuc-HincII | 0.68 | 64.0 | 5.19e-01 | 100.0% | 71.9% |
| 5036502 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.68 | 43.0 | 4.93e-01 | 70.7% | 84.8% |
| 3764706 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.68 | 49.0 | 4.07e-01 | 75.0% | 80.0% |
| 3901419 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.67 | 49.0 | 3.99e-01 | 75.0% | 69.0% |
| 4045707 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.66 | 50.0 | 4.48e-01 | 93.6% | 56.9% |
| 3645028 | 294.1.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › potato_inhibit | 0.66 | 36.0 | 4.74e-01 | 97.1% | 100.0% |
| 3727039 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.65 | 48.0 | 3.86e-01 | 77.1% | 64.8% |
| 4932253 | 2008.1.1.100 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N_2 | 0.64 | 44.0 | 4.44e-01 | 70.7% | 70.3% |
| 5046617 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 56.0 | 5.13e-01 | 94.3% | 98.9% |
| 5080723 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 47.0 | 4.56e-01 | 75.7% | 69.0% |
| 4260603 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.64 | 46.0 | 4.43e-01 | 74.3% | 93.8% |
| 5015088 | 2008.1.1.51 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › McrBC | 0.63 | 45.0 | 4.09e-01 | 73.6% | 77.4% |
| 4352326 | 2008.1.1.81 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2726 | 0.63 | 43.0 | 4.65e-01 | 70.0% | 92.5% |
| 3274249 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 44.0 | 3.87e-01 | 75.7% | 52.6% |
| 3567156 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.61 | 49.0 | 4.17e-01 | 85.0% | 82.2% |
| 3491163 | 864.1.1.2 ↗ | a+b two layers › DLC › DLC › DLC › Tctex-1 | 0.60 | 49.0 | 5.14e-01 | 100.0% | 96.1% |
| 4954702 | 2008.1.1.114 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 | 0.59 | 43.0 | 4.60e-01 | 100.0% | 88.3% |
| 4196390 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.56 | 48.0 | 4.93e-01 | 92.9% | 99.3% |
| 4271425 | 2008.1.1.81 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2726 | 0.56 | 43.0 | 4.10e-01 | 79.3% | 82.5% |
| 3320243 | 7575.1.1.11 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › PF31181 | 0.56 | 42.0 | 3.39e-01 | 78.6% | 91.6% |
| 3212693 | 145.1.1.30 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › FBA_2 | 0.56 | 35.0 | 2.72e-01 | 95.0% | 27.4% |
| 3953998 | 4143.1.1.2 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › Thump_like | 0.56 | 31.0 | 3.94e-01 | 94.3% | 100.0% |
| 5014942 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 29.0 | 3.86e-01 | 98.6% | 100.0% |
| 4307695 | 2008.1.1.10 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › MutH | 0.56 | 49.0 | 4.25e-01 | 100.0% | 62.3% |
| 2601397 | 7601.1.1.1 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N | 0.54 | 48.0 | 3.90e-01 | 95.0% | 88.7% |
| 2730 | 101.1.2.59 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF480 | 0.54 | 27.0 | 3.37e-01 | 100.0% | 77.4% |
| 4956545 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 26.0 | 3.58e-01 | 97.9% | 92.9% |
| 5058454 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 27.0 | 3.41e-01 | 97.9% | 80.0% |
| 5031662 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.53 | 30.0 | 3.18e-01 | 94.3% | 60.8% |
| 5057963 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.53 | 45.0 | 4.51e-01 | 98.6% | 92.4% |
| 5043608 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 26.0 | 3.51e-01 | 97.9% | 97.1% |
| 4999520 | 2008.1.1.44 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › FokI_cleav_dom | 0.52 | 44.0 | 4.14e-01 | 92.9% | 87.1% |
| 4959713 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.51 | 28.0 | 3.20e-01 | 93.6% | 69.4% |
| 5026582 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 31.0 | 3.61e-01 | 92.9% | 87.4% |
| 3833809 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 29.0 | 3.45e-01 | 97.9% | 82.1% |
| 5047010 | 2008.1.1.63 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › MvaI_BcnI | 0.50 | 46.0 | 3.91e-01 | 100.0% | 79.1% |
D2
high
residues 141-230
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5ibkB00 | 1.20.1280.50 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.52 | 27.0 | 3.54e-01 | 98.9% | 97.8% |
| 2r4gA02 | 1.10.10.1970 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TERT catalytic subunit-like | 0.51 | 29.0 | 3.33e-01 | 98.9% | 76.6% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3272235 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.56 | 49.0 | 4.12e-01 | 97.8% | 80.0% |
| 3341479 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.55 | 29.0 | 3.22e-01 | 100.0% | 61.4% |