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OP918669.1__WBL53558.1__X__00008

Bact-Vir

OP918669.1__WBL53558.1__X__00008

Identity

Accession:
OP918669 ↗
Kingdom:
phage

Quality

73.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-102
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05521.19 best Phage_HCP 73.0 3.90e-20 98.8% 72.6%
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kz4A00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.77 72.0 6.36e-01 100.0% 79.5%
1wxrA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.73 47.0 3.26e-01 86.6% 21.0%
2as9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 55.0 5.26e-01 89.0% 70.2%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.71 64.0 6.04e-01 96.3% 89.8%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 38.0 4.19e-01 90.2% 66.2%
1pj5A05 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.69 44.0 4.55e-01 73.2% 67.9%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 59.0 4.56e-01 91.5% 67.4%
4m1xD00 3.30.1360.240 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.69 47.0 5.01e-01 86.6% 80.6%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.68 57.0 5.06e-01 91.5% 65.0%
2kcaA00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.68 60.0 5.49e-01 100.0% 79.8%
3qzqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 47.0 5.07e-01 89.0% 87.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 40.0 4.30e-01 92.7% 69.6%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.67 54.0 5.50e-01 91.5% 89.9%
1shyA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 56.0 5.16e-01 91.5% 71.6%
5mmiU01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.66 49.0 4.98e-01 84.1% 79.3%
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 54.0 5.06e-01 91.5% 74.3%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.64 53.0 4.22e-01 91.5% 47.6%
5fcrC02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 54.0 4.87e-01 90.2% 72.9%
2onlC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 46.0 4.61e-01 80.5% 74.4%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 52.0 4.35e-01 91.5% 77.5%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 52.0 4.80e-01 91.5% 83.8%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 51.0 4.33e-01 91.5% 84.7%
6k3lB02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 48.0 4.63e-01 85.4% 74.7%
1blxA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 48.0 4.63e-01 84.1% 85.9%
2gysA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 46.0 4.61e-01 85.4% 77.9%
3gwzA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 44.0 3.08e-01 75.6% 67.6%
2xzmP00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 47.0 3.90e-01 85.4% 48.6%
3fn2A00 3.30.2200.10 Alpha Beta › 2-Layer Sandwich › histidine kinase doma clostridium symbiosum atcc 14940 › histidine kinase doma clostridium symbiosum atcc 14940 0.60 44.0 4.14e-01 76.8% 83.5%
2w59A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 46.0 4.29e-01 82.9% 68.0%
1mruA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 47.0 4.53e-01 85.4% 81.5%
3szeA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 52.0 3.54e-01 100.0% 51.3%
3ndiA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 42.0 3.19e-01 75.6% 84.7%
2k4qA00 4.10.410.40 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.58 49.0 4.05e-01 96.3% 79.5%
2wcrB00 3.10.129.140 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Helicobacter TNF-alpha-Inducing protein 0.58 43.0 3.53e-01 78.0% 67.8%
4wojA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.58 47.0 3.51e-01 89.0% 94.3%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.58 50.0 4.37e-01 96.3% 70.4%
2iteA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 46.0 4.07e-01 89.0% 58.7%
4rv9A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 41.0 3.14e-01 75.6% 80.6%
5xyiY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 43.0 4.04e-01 82.9% 65.7%
2rc5B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 45.0 3.90e-01 91.5% 80.7%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 43.0 4.04e-01 84.1% 67.3%
4bwkB01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.56 44.0 3.09e-01 85.4% 27.9%
1ejfA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 44.0 4.02e-01 86.6% 70.9%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 38.0 3.71e-01 76.8% 65.6%
2apoA03 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 37.0 3.65e-01 79.3% 64.1%
4gaaA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.54 42.0 3.20e-01 82.9% 87.0%
1v05A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.65e-01 84.1% 62.5%
3o4oC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.91e-01 85.4% 84.5%
2mn5A00 3.30.30.140 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.54 35.0 3.96e-01 89.0% 96.4%
4kigA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 39.0 3.08e-01 76.8% 98.9%
2ausC02 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.53 38.0 2.98e-01 80.5% 32.8%
3f8uD03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.78e-01 84.1% 67.9%
4labA00 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.52 39.0 3.02e-01 79.3% 41.2%
4wrnA02 2.60.40.3210 Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-N domain 0.52 38.0 3.60e-01 86.6% 61.9%
2qmwA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 39.0 3.72e-01 79.3% 97.8%
3d2uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.72e-01 82.9% 71.7%
1bwvA01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.51 43.0 3.71e-01 92.7% 64.8%
4tllC01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 31.0 2.75e-01 80.5% 38.8%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4032883 1.1.13.3 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.85 80.0 7.25e-01 100.0% 83.8%
3963092 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.79 58.0 5.52e-01 92.7% 66.3%
4260208 1.1.13.62 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 0.75 63.0 5.77e-01 89.0% 99.0%
3509725 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.73 56.0 3.97e-01 90.2% 27.9%
2642578 1.1.13.3 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.73 68.0 6.06e-01 100.0% 82.7%
4669352 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 61.0 5.49e-01 93.9% 67.3%
3936663 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 59.0 5.11e-01 89.0% 75.2%
4260084 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.72 58.0 5.08e-01 90.2% 59.2%
3271700 1.1.7.25 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.71 55.0 5.31e-01 89.0% 74.4%
3216247 1.1.7.25 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.70 55.0 5.40e-01 89.0% 76.7%
119197 1.1.13.3 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.68 60.0 5.49e-01 100.0% 79.8%
3289002 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.68 48.0 3.16e-01 84.1% 17.9%
185291 1.1.13.20 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.67 55.0 5.59e-01 92.7% 90.0%
4883825 1.1.13.20 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.67 57.0 5.50e-01 91.5% 85.9%
3968097 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.66 54.0 4.86e-01 89.0% 64.5%
3261759 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 48.0 4.75e-01 85.4% 72.9%
3948350 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.63 52.0 4.86e-01 90.2% 93.0%
3678892 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.62 45.0 4.59e-01 82.9% 78.8%
3569505 11.1.1.363 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 0.61 44.0 4.24e-01 84.1% 66.3%
3895201 11.1.1.363 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 0.61 44.0 3.86e-01 84.1% 50.4%
3250792 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 41.0 4.47e-01 80.5% 87.7%
3734783 2003.1.9.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.60 44.0 2.86e-01 78.0% 52.6%
1141903 3488.1.1.0 a+b three layers › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain 0.60 44.0 4.14e-01 76.8% 83.5%
4452393 304.112.1.10 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › Med13_N 0.59 37.0 3.39e-01 85.4% 49.5%
3896294 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.59 41.0 3.97e-01 84.1% 64.2%
4110501 207.11.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.58 46.0 3.24e-01 85.4% 68.8%
1320672 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.58 50.0 3.52e-01 96.3% 33.5%
3725920 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.58 41.0 3.95e-01 75.6% 73.7%
3822839 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.57 39.0 3.90e-01 79.3% 69.4%
3271894 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 40.0 3.82e-01 87.8% 62.0%
5056494 12.5.1.0 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.56 43.0 3.78e-01 81.7% 76.7%
3840640 11.1.1.363 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 0.56 40.0 3.44e-01 84.1% 46.7%
3853561 11.1.1.363 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 0.55 39.0 3.85e-01 82.9% 68.9%
4054495 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.55 42.0 3.93e-01 84.1% 67.0%
3271221 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 42.0 3.87e-01 86.6% 62.7%
4473668 304.102.1.1 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.55 37.0 3.03e-01 82.9% 34.1%
4197562 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.53 39.0 2.87e-01 80.5% 51.8%
4943359 304.102.1.13 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.52 38.0 2.86e-01 79.3% 40.4%
3944288 319.3.1.1 beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › AMIN 0.52 43.0 3.86e-01 90.2% 65.2%
4974179 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.52 36.0 3.31e-01 76.8% 53.6%
5033279 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.52 38.0 2.81e-01 79.3% 39.6%
3248782 330.3.1.2 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › MRP-S28 0.51 40.0 3.60e-01 82.9% 64.5%
5036917 304.102.1.13 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.51 38.0 3.16e-01 80.5% 50.0%
417659 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.51 39.0 3.08e-01 84.1% 84.4%
3921201 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 35.0 3.39e-01 84.1% 63.2%
4025731 304.102.1.1 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.50 39.0 2.95e-01 82.9% 39.9%