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OP921040.1__WAX23079.1__pA_gene0038__00038

Bact-Vir

OP921040.1__WAX23079.1__pA_gene0038__00038

Identity

Accession:
OP921040 ↗
Kingdom:
phage

Quality

75.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-146
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09979.15 best DUF2213 51.9 1.30e-13 97.8% 64.0%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o6eA00 3.20.16.10 Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain 0.73 66.0 5.49e-01 96.3% 66.7%
1at3A00 3.20.16.10 Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain 0.72 67.0 5.57e-01 97.1% 60.8%
2ey4D00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.72 36.0 4.69e-01 89.0% 86.7%
3u28C00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.71 38.0 4.55e-01 89.0% 77.2%
1cmvB00 3.20.16.10 Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain 0.68 62.0 5.26e-01 96.3% 63.1%
2dbbA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.66 39.0 4.63e-01 99.3% 86.0%
2eqnA01 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.65 35.0 4.23e-01 89.0% 80.5%
2ia0B02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.64 36.0 4.12e-01 97.1% 74.7%
2cxiA01 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.62 32.0 4.13e-01 89.0% 86.1%
2dt9A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 34.0 4.33e-01 96.3% 94.9%
1yz7A02 3.30.70.1130 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha 0.58 38.0 4.50e-01 96.3% 100.0%
1bwvA01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.58 43.0 4.40e-01 97.8% 82.0%
2j0wA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 31.0 3.86e-01 97.1% 86.4%
2d69B01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.58 41.0 4.30e-01 97.8% 79.4%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.57 39.0 4.23e-01 95.6% 84.8%
3tviA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.57 34.0 3.23e-01 98.5% 48.4%
1hxmB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 37.0 4.11e-01 100.0% 84.8%
3s1tA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 33.0 4.00e-01 96.3% 95.0%
1uw4A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 34.0 4.07e-01 98.5% 90.1%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 31.0 3.95e-01 96.3% 97.3%
2go8A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 30.0 3.76e-01 97.8% 93.2%
7dluA03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 33.0 4.02e-01 74.3% 100.0%
3f62A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 36.0 3.99e-01 93.4% 84.3%
3bm7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 36.0 4.00e-01 96.3% 85.8%
1cl7I00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 32.0 3.85e-01 96.3% 93.9%
2e7vA01 3.30.70.960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain 0.54 39.0 4.31e-01 95.6% 96.2%
1dn0D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 33.0 3.85e-01 94.1% 88.3%
3c1mA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.54 34.0 3.23e-01 97.8% 51.2%
4dn9B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 33.0 3.83e-01 95.6% 89.7%
4q9bA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 34.0 3.77e-01 93.4% 88.1%
4j37A02 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.50 43.0 3.90e-01 94.1% 73.2%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3166306 50.1.1.4 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › DUF2213 0.95 89.0 8.49e-01 97.1% 99.3%
3945977 50.1.1.4 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › DUF2213 0.91 85.0 7.85e-01 96.3% 97.6%
3964948 1.1.16.4 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › Peptidase_S78 0.88 77.0 8.09e-01 96.3% 99.2%
4960055 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.87 76.0 7.64e-01 91.9% 100.0%
3585229 50.1.1.2 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S77 0.86 78.0 7.72e-01 94.1% 99.3%
5003309 50.1.1.0 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin 0.86 77.0 7.96e-01 94.1% 100.0%
4995675 50.1.1.0 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin 0.83 76.0 7.05e-01 95.6% 92.7%
1933303 50.1.1.2 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S77 0.83 75.0 6.97e-01 94.9% 90.4%
5004197 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.82 58.0 6.78e-01 72.8% 100.0%
3602442 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.76 59.0 6.58e-01 88.2% 100.0%
3963908 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.75 38.0 5.10e-01 96.3% 94.3%
2771876 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.71 41.0 4.50e-01 86.0% 69.0%
5017568 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.70 38.0 4.76e-01 89.7% 88.7%
3958771 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.69 48.0 5.10e-01 97.8% 79.2%
3286366 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.69 47.0 4.79e-01 95.6% 70.4%
3959024 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.69 45.0 5.16e-01 93.4% 86.7%
3957231 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.68 48.0 5.28e-01 95.6% 88.2%
3955063 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.68 49.0 4.78e-01 97.1% 68.3%
3288888 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.68 47.0 4.76e-01 97.1% 71.1%
3277706 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.68 49.0 4.87e-01 97.8% 71.4%
3953377 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.68 49.0 4.79e-01 97.8% 69.0%
3959560 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.68 48.0 5.30e-01 94.9% 89.1%
3290923 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.68 47.0 4.74e-01 97.1% 71.1%
3289705 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.67 47.0 4.73e-01 97.1% 70.0%
3290618 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.67 48.0 4.74e-01 96.3% 70.0%
3954144 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.67 48.0 4.75e-01 97.1% 69.7%
3960414 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.66 47.0 4.62e-01 97.1% 68.3%
3956379 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.66 48.0 4.62e-01 97.1% 66.7%
3741921 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.66 42.0 4.76e-01 89.7% 83.8%
3957925 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.65 47.0 4.70e-01 94.1% 72.1%
4913412 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.64 46.0 4.83e-01 92.6% 80.0%
1150480 50.1.1.1 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S21 0.64 46.0 5.22e-01 73.5% 100.0%
3282819 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.63 45.0 4.45e-01 96.3% 70.0%
4026004 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 41.0 4.42e-01 90.4% 80.0%
3943528 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.59 46.0 4.94e-01 97.1% 92.5%
3347366 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.58 44.0 4.82e-01 94.1% 93.9%
3669715 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.58 46.0 4.23e-01 97.1% 65.9%
4654097 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.57 46.0 4.39e-01 96.3% 73.5%
5027042 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.57 36.0 4.32e-01 96.3% 98.9%
3384073 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 44.0 4.65e-01 89.7% 90.8%
4005635 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.57 49.0 5.15e-01 97.1% 99.2%
3968189 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.57 48.0 5.05e-01 95.6% 97.6%
3968188 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.56 46.0 4.64e-01 94.1% 85.9%
3982061 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.56 46.0 4.83e-01 92.6% 93.6%
4132820 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.56 35.0 3.93e-01 89.0% 81.0%
4291497 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.56 37.0 4.17e-01 100.0% 91.0%
5052894 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.55 37.0 4.21e-01 97.1% 97.8%
3515922 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 40.0 4.11e-01 94.1% 80.0%
4881066 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.54 35.0 3.96e-01 94.1% 90.0%
4508428 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.53 34.0 4.01e-01 88.2% 92.6%
3704673 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 37.0 3.75e-01 94.9% 72.1%
3367409 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.51 46.0 3.44e-01 100.0% 57.2%
3417130 11.1.1.53 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.51 46.0 4.28e-01 100.0% 86.9%
D2 high residues 248-362
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f75P00 1.10.287.2250 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 37.0 4.50e-01 76.5% 89.3%
4pjjA04 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.61 38.0 3.75e-01 78.3% 57.6%
3bjbD00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 37.0 3.21e-01 73.0% 44.8%
7w5gA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.50 36.0 2.58e-01 73.0% 32.4%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3485531 164.1.1.21 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › PF26095 0.53 41.0 4.08e-01 80.9% 80.8%
5022438 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.53 37.0 3.42e-01 72.2% 98.0%
3510444 3281.1.1.1 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.51 39.0 3.16e-01 81.7% 94.8%
3664902 101.1.10.7 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.51 29.0 3.13e-01 73.0% 64.0%
3807607 604.5.1.35 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TIC20 0.51 35.0 3.24e-01 71.3% 58.7%
D3 medium residues 164-214
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6nplA01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.81 66.0 3.76e-01 90.2% 22.3%
2fp1B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.79 64.0 4.42e-01 88.2% 29.9%
2zyhA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.72 50.0 3.29e-01 74.5% 45.9%
4mzyA01 3.20.140.10 Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase 0.61 47.0 2.96e-01 92.2% 36.8%
2ivxB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 48.0 3.62e-01 84.3% 46.1%
1b8pA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.58 46.0 3.21e-01 86.3% 32.0%
2c42A01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.57 44.0 2.92e-01 90.2% 61.1%
4r16A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 45.0 3.17e-01 92.2% 27.5%
3hbjA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.50 35.0 2.32e-01 78.4% 24.6%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3385861 3747.1.1.2 a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C 0.84 74.0 5.34e-01 94.1% 86.0%
3415961 603.1.1.101 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_6 0.80 69.0 4.06e-01 94.1% 13.9%
3295705 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.63 50.0 3.64e-01 86.3% 93.3%