←Back to structures
OP940114.1__WAX23200.1__VL10_ORF09__00009
Bact-VirOP940114.1__WAX23200.1__VL10_ORF09__00009
Identity
- Accession:
- OP940114 ↗
- Kingdom:
- phage
Quality
70.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Herelleviridae›
Silviavirus›
Staphylococcus_phage_vB_SauM_VL10
TaxID: 3003699
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-99
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b33N01 | 3.30.1490.170 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Allophycocyanin linker chain (domain) | 0.63 | 37.0 | 4.59e-01 | 74.7% | 100.0% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.62 | 38.0 | 3.80e-01 | 93.7% | 60.4% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.60 | 39.0 | 4.37e-01 | 76.8% | 87.3% |
| 2kr7A01 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.60 | 44.0 | 4.50e-01 | 80.0% | 90.4% |
| 2v5yA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 42.0 | 4.17e-01 | 98.9% | 75.3% |
| 1qdlB00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.57 | 37.0 | 2.96e-01 | 97.9% | 31.3% |
| 2zaiA04 | 2.60.40.3030 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 41.0 | 3.67e-01 | 85.3% | 84.8% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4642338 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.72 | 40.0 | 5.14e-01 | 74.7% | 98.1% |
| 3732370 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.66 | 39.0 | 4.75e-01 | 74.7% | 93.3% |
| 2794904 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.63 | 37.0 | 4.29e-01 | 74.7% | 83.3% |
| 2557261 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.59 | 35.0 | 3.60e-01 | 74.7% | 59.8% |
| 4027528 | 929.1.1.0 ↗ | beta duplicates or obligate multimers › Resistin › Resistin › Resistin | 0.57 | 40.0 | 4.08e-01 | 100.0% | 76.7% |
| 3991293 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 35.0 | 3.27e-01 | 91.6% | 52.8% |
| 3371026 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.52 | 38.0 | 2.83e-01 | 76.8% | 92.9% |
| 3599867 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.52 | 46.0 | 4.34e-01 | 100.0% | 82.5% |
| 3484576 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.52 | 37.0 | 3.55e-01 | 100.0% | 61.7% |
| 3487137 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 41.0 | 3.77e-01 | 100.0% | 65.4% |
| 3624262 | 101.1.2.115 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDC27 | 0.51 | 37.0 | 3.25e-01 | 87.4% | 49.3% |
| 3487139 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 41.0 | 3.67e-01 | 98.9% | 60.7% |
| 3488856 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 41.0 | 3.65e-01 | 97.9% | 60.7% |