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OP940114.1__WAX23297.1__VL10_ORF106__00106

Bact-Vir

OP940114.1__WAX23297.1__VL10_ORF106__00106

Identity

Accession:
OP940114 ↗
Kingdom:
phage

Quality

57.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Silviavirus› Staphylococcus_phage_vB_SauM_VL10

TaxID: 3003699

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 145-322
PDB
D2 medium residues 6-141
PDB
D3 medium residues 334-414
PDB
D4 medium residues 415-526_626-642
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f2cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 42.0 4.58e-01 71.3% 94.5%
1aisB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 34.0 3.78e-01 72.1% 73.7%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 40.0 4.28e-01 72.1% 94.7%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 39.0 4.41e-01 70.5% 100.0%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 40.0 3.89e-01 72.9% 94.3%
7jv7B01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 40.0 3.89e-01 79.8% 67.8%
3d1uA03 1.20.1270.240 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.55 35.0 3.88e-01 89.9% 82.2%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 40.0 3.97e-01 79.1% 75.8%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 39.0 3.85e-01 81.4% 70.6%
3kyiA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.51 37.0 3.76e-01 91.5% 75.8%
4eadA02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.51 40.0 3.33e-01 83.7% 85.2%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3781919 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.57 35.0 3.66e-01 92.2% 66.4%
5046584 1075.5.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.56 43.0 3.51e-01 82.2% 88.6%
4938108 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.55 41.0 3.94e-01 76.7% 95.9%
4977290 3352.1.1.0 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.54 48.0 3.55e-01 100.0% 97.4%
4943135 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.53 39.0 3.68e-01 76.7% 90.0%
3773789 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.51 42.0 4.00e-01 86.8% 85.3%
4996762 3352.1.1.3 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT 0.51 43.0 3.29e-01 94.6% 96.1%
5023607 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.51 39.0 3.81e-01 82.2% 84.1%
3807187 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.51 38.0 3.65e-01 80.6% 89.7%
3932277 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.50 38.0 3.10e-01 79.8% 98.8%
D5 medium residues 527-625
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 40.0 4.02e-01 76.8% 64.1%
1ywfA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 45.0 3.45e-01 87.9% 86.3%
3wctD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 46.0 4.10e-01 93.9% 89.8%
1ciyA01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.53 38.0 3.02e-01 76.8% 91.0%
1yhuB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 44.0 3.91e-01 92.9% 89.6%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 40.0 3.33e-01 80.8% 58.6%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 44.0 3.95e-01 94.9% 90.0%
2h5nC00 1.10.3680.10 Mainly Alpha › Orthogonal Bundle › TerB-like › TerB-like 0.52 40.0 3.76e-01 84.8% 90.3%
1htjF00 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.51 39.0 3.27e-01 82.8% 51.6%
1fmjA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 44.0 3.04e-01 94.9% 67.8%
2ckwA04 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.50 38.0 3.80e-01 86.9% 77.6%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4983336 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.56 42.0 3.15e-01 100.0% 32.2%
5046548 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.53 40.0 3.00e-01 99.0% 32.5%
3858855 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.51 38.0 3.31e-01 79.8% 77.4%