←Back to structures
OP947161.1__WBC28413.1__RPMD05_31__00032
Bact-VirOP947161.1__WBC28413.1__RPMD05_31__00032
Identity
- Accession:
- OP947161 ↗
- Kingdom:
- phage
Quality
78.4
mean pLDDT
Taxonomy
TaxID: 3003838
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-40
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4r03A00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.87 | 73.0 | 4.99e-01 | 100.0% | 49.5% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.85 | 70.0 | 5.26e-01 | 100.0% | 51.2% |
| 4r8oA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.82 | 67.0 | 4.80e-01 | 100.0% | 51.0% |
| 4obiA00 | 2.60.320.10 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain | 0.77 | 62.0 | 4.63e-01 | 100.0% | 47.1% |
| 3d2mA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.75 | 62.0 | 4.00e-01 | 100.0% | 42.0% |
| 7uclA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.74 | 55.0 | 3.90e-01 | 83.9% | 38.2% |
| 8a9nA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.73 | 63.0 | 4.13e-01 | 100.0% | 51.9% |
| 1y9kA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.73 | 60.0 | 4.16e-01 | 100.0% | 56.6% |
| 3wknF00 | 6.20.50.120 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.73 | 53.0 | 4.83e-01 | 83.9% | 60.9% |
| 8aimG01 | 3.10.450.20 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor | 0.71 | 52.0 | 3.94e-01 | 83.9% | 35.8% |
| 6dxwA01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.70 | 57.0 | 3.42e-01 | 100.0% | 16.6% |
| 4lqzA00 | 2.40.128.570 | Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 | 0.70 | 57.0 | 3.82e-01 | 100.0% | 25.2% |
| 1ut7B01 | 2.170.150.80 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain | 0.70 | 54.0 | 3.78e-01 | 100.0% | 41.6% |
| 2f68X01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.68 | 54.0 | 3.60e-01 | 96.8% | 46.4% |
| 4m85C00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.68 | 54.0 | 3.42e-01 | 100.0% | 49.7% |
| 3ugvA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.66 | 52.0 | 3.53e-01 | 93.5% | 87.3% |
| 3mgdB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.66 | 53.0 | 3.52e-01 | 100.0% | 57.2% |
| 5cqfA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.66 | 47.0 | 2.67e-01 | 83.9% | 6.2% |
| 1mi1A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.66 | 52.0 | 3.72e-01 | 100.0% | 52.4% |
| 2kheA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.65 | 54.0 | 3.96e-01 | 100.0% | 46.1% |
| 3g1pA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.65 | 51.0 | 3.09e-01 | 96.8% | 37.3% |
| 3pvlA04 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.64 | 46.0 | 3.34e-01 | 83.9% | 28.3% |
| 5ib0A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 50.0 | 3.38e-01 | 100.0% | 59.1% |
| 1ypzF01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 46.0 | 3.27e-01 | 100.0% | 44.7% |
| 3r1kA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 49.0 | 3.35e-01 | 100.0% | 63.2% |
| 1ym5A01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.60 | 43.0 | 2.93e-01 | 96.8% | 19.1% |
| 5wt7A00 | 2.30.180.10 | Mainly Beta › Roll › FAS1 domain › FAS1 domain | 0.58 | 43.0 | 2.96e-01 | 100.0% | 21.4% |
| 5ddtA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.57 | 44.0 | 2.74e-01 | 100.0% | 50.9% |
| 1q16A03 | 2.20.25.90 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains | 0.56 | 39.0 | 3.65e-01 | 83.9% | 85.1% |
| 2bf6A02 | 2.40.220.10 | Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 | 0.55 | 40.0 | 3.35e-01 | 100.0% | 40.9% |
| 1wzoA01 | 2.30.30.370 | Mainly Beta › Roll › SH3 type barrels. › FAH | 0.50 | 38.0 | 3.70e-01 | 100.0% | 75.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3232545 | 207.1.1.52 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 | 0.86 | 71.0 | 4.25e-01 | 100.0% | 15.6% |
| 3838919 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.81 | 65.0 | 4.26e-01 | 100.0% | 21.4% |
| 5081301 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.80 | 69.0 | 3.81e-01 | 96.8% | 70.0% |
| 3466857 | 2484.1.1.110 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE | 0.76 | 58.0 | 3.50e-01 | 87.1% | 74.4% |
| 4854856 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.75 | 63.0 | 4.40e-01 | 100.0% | 61.4% |
| 3953671 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.73 | 62.0 | 3.95e-01 | 100.0% | 40.7% |
| 4971670 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.72 | 60.0 | 3.95e-01 | 100.0% | 41.5% |
| 5046873 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.72 | 60.0 | 4.19e-01 | 100.0% | 61.0% |
| 5074228 | 213.1.1.29 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_9 | 0.72 | 60.0 | 3.73e-01 | 100.0% | 40.6% |
| 4347105 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.72 | 55.0 | 3.91e-01 | 100.0% | 75.7% |
| 3880817 | 233.1.1.0 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain | 0.69 | 57.0 | 4.35e-01 | 100.0% | 50.0% |
| 3830098 | 7579.1.1.20 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › LCAT | 0.68 | 52.0 | 2.91e-01 | 96.8% | 7.9% |
| 3587255 | 213.1.1.21 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › LPG_synthase_C | 0.67 | 55.0 | 3.80e-01 | 100.0% | 50.4% |
| 3676320 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 51.0 | 4.25e-01 | 100.0% | 45.6% |
| 1688899 | 2003.1.2.28 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase | 0.66 | 47.0 | 3.10e-01 | 83.9% | 16.2% |
| 4943842 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.62 | 48.0 | 3.11e-01 | 100.0% | 75.1% |
| 3588855 | 2485.1.1.80 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DUF6568 | 0.61 | 45.0 | 3.52e-01 | 96.8% | 37.1% |
| 3963030 | 213.1.1.29 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_9 | 0.60 | 48.0 | 3.16e-01 | 100.0% | 50.9% |
| 5061066 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.59 | 41.0 | 3.43e-01 | 96.8% | 68.8% |
| 4836497 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.59 | 41.0 | 2.82e-01 | 100.0% | 20.7% |
| 5049997 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 45.0 | 3.00e-01 | 100.0% | 96.1% |
| 4967196 | 2008.1.1.63 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › MvaI_BcnI | 0.58 | 44.0 | 3.07e-01 | 93.5% | 26.7% |
| 2332137 | 375.1.1.11 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27 | 0.54 | 41.0 | 3.35e-01 | 100.0% | 63.0% |
| 3749256 | 2486.1.1.7 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S41 | 0.51 | 35.0 | 2.19e-01 | 83.9% | 47.3% |