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OP947161.1__WBC28420.1__RPMD05_38__00039

Bact-Vir

OP947161.1__WBC28420.1__RPMD05_38__00039

Identity

Accession:
OP947161 ↗
Kingdom:
phage

Quality

93.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhodobacteraceae_phage_LS06-2018-MD05

TaxID: 3003838

Cluster

View cluster (41 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-106
PDB
Domain cluster: rep: MT889387.1__QOP66146.1__SEA_DANIELLEIGNACE_5__00005__D28-163
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q8rA00 3.30.1330.70 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Holliday junction resolvase RusA 0.87 82.0 7.84e-01 100.0% 94.1%
2xkbL00 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.67 55.0 3.74e-01 100.0% 24.8%
2r75102 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.66 52.0 5.20e-01 100.0% 80.9%
5hweA01 3.30.1330.170 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Cyanuric acid hydrolase/Barbiturase, RU A 0.64 51.0 5.12e-01 99.0% 85.0%
5hy0A01 3.30.1330.170 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Cyanuric acid hydrolase/Barbiturase, RU A 0.63 52.0 5.15e-01 100.0% 86.1%
1dihA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.63 45.0 4.50e-01 74.3% 88.9%
3zidB00 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.62 49.0 3.41e-01 100.0% 25.7%
5l16A01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.62 50.0 4.75e-01 100.0% 74.0%
3byqA00 3.30.1330.110 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › BB2672 0.61 54.0 4.50e-01 100.0% 71.7%
4ei7B01 3.30.1330.190 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 0.61 55.0 4.90e-01 100.0% 72.8%
4rhaA00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.60 54.0 5.03e-01 100.0% 90.8%
3o9zD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 43.0 3.66e-01 75.2% 67.6%
1ygyB03 3.30.1330.90 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 0.60 50.0 4.59e-01 92.4% 73.4%
2otmA00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.59 53.0 4.73e-01 100.0% 73.5%
4b45A02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.59 48.0 4.63e-01 100.0% 78.8%
3cypB00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.59 52.0 4.91e-01 100.0% 82.9%
3d01E00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.59 52.0 4.62e-01 100.0% 73.5%
1yawB01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.59 47.0 4.39e-01 100.0% 67.9%
3gtzA00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.58 45.0 4.39e-01 100.0% 76.5%
2rb9A01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.58 47.0 4.28e-01 100.0% 64.6%
3kizA01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.57 52.0 4.70e-01 100.0% 78.0%
1oi2A02 3.30.1180.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 0.57 51.0 4.45e-01 100.0% 86.4%
1vk3A03 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.57 47.0 4.25e-01 100.0% 64.6%
1gx1A00 3.30.1330.50 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 0.56 51.0 4.47e-01 100.0% 94.3%
3cb2A02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.56 47.0 4.83e-01 100.0% 97.0%
4c81A00 3.30.1330.50 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 0.56 50.0 4.41e-01 100.0% 91.0%
6aeoB01 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.56 48.0 4.53e-01 99.0% 83.7%
3w5xA00 3.30.70.1350 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain 0.56 36.0 4.07e-01 86.7% 87.5%
3rycB02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.55 49.0 4.78e-01 100.0% 89.5%
1tvkA02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.54 48.0 4.70e-01 100.0% 95.7%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3982309 301.4.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA 0.88 83.0 7.92e-01 100.0% 92.5%
318712 301.4.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA 0.86 80.0 7.66e-01 100.0% 93.3%
3963267 301.4.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA 0.86 80.0 7.53e-01 100.0% 94.4%
4156345 301.4.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA 0.84 79.0 7.52e-01 100.0% 93.3%
5061637 301.4.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA 0.84 78.0 6.94e-01 100.0% 93.1%
5083025 301.4.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA 0.79 74.0 6.94e-01 100.0% 94.4%
5032184 301.4.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA 0.78 72.0 7.12e-01 100.0% 94.5%
4537541 301.4.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA 0.77 71.0 6.81e-01 100.0% 95.8%
3979733 301.3.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like 0.64 51.0 5.20e-01 100.0% 87.6%
5025733 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.62 45.0 4.91e-01 80.0% 92.9%
4977866 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.62 48.0 4.27e-01 100.0% 57.3%
4415704 301.6.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › FtsZ_C 0.62 50.0 4.45e-01 100.0% 60.7%
4987759 301.6.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like 0.61 52.0 4.44e-01 100.0% 56.0%
3626848 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.61 50.0 4.11e-01 100.0% 49.2%
3489448 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.61 45.0 4.89e-01 97.1% 94.1%
6981 301.11.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › BB2672-like › BB2672-like › AA_synth 0.61 54.0 4.50e-01 100.0% 71.7%
341068 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.61 50.0 4.49e-01 100.0% 64.5%
4994632 4143.1.1.1 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP 0.61 47.0 4.95e-01 99.0% 96.7%
5023206 4143.1.1.1 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP 0.61 46.0 4.77e-01 98.1% 89.5%
4971101 301.6.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like 0.61 54.0 4.61e-01 100.0% 60.6%
3706512 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.61 49.0 4.16e-01 100.0% 53.5%
4015581 301.13.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain 0.60 54.0 4.68e-01 100.0% 80.6%
4994465 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.60 49.0 3.45e-01 100.0% 28.9%
4954850 304.111.1.1 ↗ a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like › AIRS_C 0.60 46.0 3.27e-01 100.0% 26.5%
3835458 298.1.1.9 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › DapB_C 0.60 45.0 4.36e-01 80.0% 80.8%
3598818 301.2.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like 0.60 48.0 4.13e-01 100.0% 53.2%
5044931 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.60 49.0 4.41e-01 100.0% 65.0%
4287943 4143.1.1.1 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP 0.59 47.0 4.92e-01 100.0% 96.8%
6996 301.7.1.4 ↗ a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › YjgF_endoribonc 0.59 53.0 4.72e-01 100.0% 73.0%
2798318 301.3.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA 0.59 52.0 4.67e-01 100.0% 72.8%
4979713 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.59 46.0 4.12e-01 100.0% 60.0%
344504 301.7.1.4 ↗ a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › YjgF_endoribonc 0.59 53.0 4.68e-01 100.0% 74.8%
3960633 301.7.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like 0.59 52.0 4.72e-01 100.0% 77.2%
4971955 301.7.1.4 ↗ a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › YjgF_endoribonc 0.58 52.0 4.70e-01 100.0% 75.0%
4199874 4143.1.1.1 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP 0.58 46.0 4.68e-01 96.2% 89.0%
4947587 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.58 48.0 4.06e-01 100.0% 53.7%
4998038 301.6.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like 0.58 52.0 4.09e-01 100.0% 48.0%
4346934 301.3.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA 0.57 50.0 4.94e-01 99.0% 90.4%
4947539 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.57 50.0 4.25e-01 100.0% 59.4%
3592363 301.13.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain 0.57 50.0 4.61e-01 100.0% 95.7%
3276500 301.7.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › Ribonuc_L-PSP 0.57 51.0 4.33e-01 100.0% 72.6%
5051558 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.56 50.0 4.32e-01 100.0% 64.7%
3475110 3008.1.1.0 ↗ a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.56 43.0 4.25e-01 81.9% 100.0%
4984150 4143.1.1.1 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP 0.56 41.0 4.44e-01 97.1% 96.5%
5051078 327.7.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.56 38.0 3.99e-01 87.6% 76.8%
3187180 301.2.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › FGAR-AT_PurM_N-like 0.56 46.0 3.18e-01 93.3% 96.0%
5042344 301.6.1.3 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › CetZ_C 0.56 50.0 4.48e-01 100.0% 71.7%
5072459 327.7.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.55 36.0 4.15e-01 87.6% 94.7%
3255764 301.2.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › FGAR-AT_PurM_N-like 0.54 49.0 3.91e-01 100.0% 51.9%
4927818 327.7.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.54 37.0 3.95e-01 88.6% 82.2%
2551155 301.6.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C 0.54 48.0 3.91e-01 100.0% 53.6%
4880291 301.7.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › Ribonuc_L-PSP 0.54 48.0 4.47e-01 100.0% 81.1%
None — 0.54 48.0 3.88e-01 100.0% 52.7%
4163553 301.2.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like 0.53 48.0 3.59e-01 100.0% 40.8%
3726195 301.2.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › FGAR-AT_PurM_N-like 0.53 48.0 3.81e-01 100.0% 51.6%
3614142 301.6.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like 0.52 46.0 3.83e-01 100.0% 87.1%
3488068 301.6.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C 0.51 44.0 3.63e-01 100.0% 82.4%