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OP947161.1__WBC28464.1__RPMD05_78__00079

Bact-Vir

OP947161.1__WBC28464.1__RPMD05_78__00079

Identity

Accession:
OP947161 ↗
Kingdom:
phage

Quality

50.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhodobacteraceae_phage_LS06-2018-MD05

TaxID: 3003838

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-162
PDB
Domain cluster: rep: NC_024392.1__YP_009045168.1__LP114_114__00113__D16-138
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.79 48.0 5.95e-01 100.0% 96.0%
3fz2A00 3.30.70.1700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U 0.72 56.0 6.14e-01 100.0% 98.4%
5mghA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.61 56.0 4.48e-01 100.0% 82.7%
8alzB04 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.61 33.0 3.91e-01 88.5% 74.5%
4e72A01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.59 33.0 3.68e-01 100.0% 68.5%
3nwrA01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.59 39.0 4.34e-01 91.7% 87.3%
3nrfA00 2.60.40.4110 Mainly Beta › Sandwich › Immunoglobulin-like › Protein of unknown function DUF4354 0.57 33.0 3.89e-01 90.4% 84.3%
1b7yB05 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 52.0 4.88e-01 99.4% 97.9%
2rttA00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 32.0 3.87e-01 87.3% 83.8%
4up8A02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 50.0 3.68e-01 99.4% 87.7%
6nrzA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 50.0 3.90e-01 100.0% 90.1%
6aqgD02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 50.0 3.94e-01 100.0% 91.8%
3m5kA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.56 44.0 4.32e-01 100.0% 78.0%
5jenA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.55 30.0 3.53e-01 100.0% 74.8%
1h6eA02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.55 32.0 3.91e-01 88.5% 86.7%
3mteA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 43.0 3.86e-01 84.7% 87.2%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 31.0 3.64e-01 89.2% 85.3%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4291659 304.124.1.8 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_Mu_Gp37 0.75 62.0 6.58e-01 100.0% 97.1%
5004177 304.124.1.3 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF3168 0.73 55.0 6.17e-01 100.0% 99.2%
5013890 11.1.1.1443 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29994 0.70 40.0 4.41e-01 100.0% 67.7%
364035 304.124.1.1 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_U 0.70 55.0 5.97e-01 100.0% 97.0%
5029238 330.2.1.0 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.69 31.0 3.88e-01 100.0% 67.0%
3589225 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.69 56.0 5.96e-01 100.0% 98.5%
4928893 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.68 58.0 6.08e-01 100.0% 97.2%
5083880 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.66 56.0 5.84e-01 100.0% 97.2%
4959986 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 34.0 4.03e-01 90.4% 75.2%
3635453 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 33.0 3.66e-01 88.5% 64.6%
5003262 304.124.1.10 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Pvc16_N 0.60 55.0 5.42e-01 100.0% 98.2%
4941514 11.1.5.59 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 0.60 36.0 4.58e-01 89.2% 100.0%
4024164 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.59 53.0 4.58e-01 100.0% 87.8%
4030130 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.58 53.0 4.31e-01 100.0% 87.6%
3606640 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 32.0 3.76e-01 96.8% 77.3%
3442957 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 34.0 3.62e-01 88.5% 65.7%
3693063 314.1.1.1 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 0.56 51.0 3.80e-01 100.0% 83.1%
None — 0.56 51.0 3.96e-01 99.4% 90.9%
3510509 11.12.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.56 36.0 3.66e-01 88.5% 65.8%
5020942 7503.1.1.0 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.55 39.0 3.84e-01 100.0% 67.1%
5019198 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 38.0 4.34e-01 96.2% 97.4%
3644486 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.52 47.0 4.55e-01 99.4% 88.0%
1904509 2003.1.5.142 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › NpmA 0.51 40.0 3.65e-01 84.1% 86.2%
3258612 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.51 38.0 4.14e-01 100.0% 92.3%
3384696 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.51 46.0 4.51e-01 100.0% 89.0%
3251562 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.51 47.0 4.51e-01 98.7% 91.1%
4183692 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.51 47.0 4.53e-01 99.4% 90.3%
3327314 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 46.0 3.17e-01 99.4% 29.4%
D2 high residues 174-245
PDB
Domain cluster: rep: IMGVR_UViG_3300029589_000301-3300029589-Ga0245106_10093019__D698-763
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18998.7 best Flg_new_2 46.1 5.40e-12 98.6% 94.6%
D3 high residues 325-463
PDB
Domain cluster: representative
CATH (79)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3milB00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.84 79.0 6.47e-01 100.0% 68.9%
1bwpA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.83 79.0 6.68e-01 99.3% 66.5%
3p94A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.83 78.0 6.75e-01 99.3% 72.1%
8gr2A01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.83 74.0 6.50e-01 94.2% 81.5%
3rjtA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.82 76.0 6.48e-01 97.8% 70.1%
4rw0A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.82 77.0 6.88e-01 98.6% 75.5%
7toiA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.81 75.0 6.41e-01 99.3% 72.6%
4rshA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.80 72.0 6.62e-01 95.7% 75.4%
7tjbA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.80 75.0 6.48e-01 99.3% 78.6%
4s1pA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.80 73.0 6.55e-01 96.4% 79.3%
5a4aA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.79 73.0 6.29e-01 97.8% 70.7%
2o14A02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.77 72.0 6.21e-01 100.0% 76.2%
1ivnA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.74 67.0 6.11e-01 99.3% 75.3%
4y9dA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 60.0 4.97e-01 95.7% 62.6%
3a2kA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.67 54.0 5.51e-01 95.0% 88.9%
4nk4F00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 59.0 4.80e-01 99.3% 67.7%
2q02A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.64 57.0 4.56e-01 97.1% 61.8%
3e9nA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 54.0 4.89e-01 98.6% 67.2%
6dvsA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.64 48.0 4.15e-01 100.0% 51.4%
2c0hA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 56.0 4.20e-01 100.0% 89.2%
2qw5A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.62 56.0 4.29e-01 100.0% 93.9%
3u7vA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 56.0 4.11e-01 99.3% 82.0%
3v3tA01 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.62 57.0 4.96e-01 100.0% 67.8%
5f2kB02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 46.0 4.02e-01 90.6% 50.9%
7wkqB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 56.0 4.90e-01 98.6% 69.5%
3nx3A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.61 47.0 3.85e-01 100.0% 44.5%
1vp4A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.61 50.0 4.24e-01 100.0% 52.8%
4wiwD01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.61 56.0 4.43e-01 100.0% 84.3%
4ee9A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.61 55.0 4.26e-01 100.0% 94.4%
7xg9A01 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.60 51.0 4.03e-01 90.6% 67.6%
5cxpA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.60 54.0 4.33e-01 99.3% 84.6%
1k77A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.60 53.0 4.33e-01 96.4% 77.6%
1j24A00 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 43.0 4.40e-01 92.1% 76.7%
1uuqA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.60 54.0 3.89e-01 100.0% 84.6%
6d2xA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.60 53.0 4.05e-01 97.1% 82.7%
3loqA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 38.0 3.92e-01 83.5% 67.4%
4f6cB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 55.0 3.98e-01 100.0% 76.1%
1darA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 53.0 4.33e-01 99.3% 92.6%
2qlrA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.58 48.0 4.09e-01 100.0% 52.5%
4ovxA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.58 52.0 4.20e-01 98.6% 73.0%
3tc3B00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.58 53.0 4.15e-01 100.0% 63.4%
4rz2B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 49.0 4.00e-01 91.4% 92.2%
2gwgA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.58 52.0 3.97e-01 100.0% 70.7%
6ia6A01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 51.0 4.10e-01 95.7% 71.7%
7w6bA01 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.57 49.0 3.96e-01 93.5% 47.8%
7wwfA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 49.0 3.93e-01 92.8% 97.4%
3pm6A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 52.0 4.11e-01 99.3% 71.8%
5fi9A01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.57 51.0 3.71e-01 100.0% 72.9%
4hylA00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.57 43.0 4.74e-01 99.3% 98.2%
2g3mA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 50.0 3.74e-01 99.3% 89.1%
3cr8C02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 38.0 3.44e-01 81.3% 48.5%
4b9bA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.57 45.0 3.63e-01 85.6% 61.8%
1v1aA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 51.0 4.01e-01 100.0% 52.2%
4i0wB01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.56 50.0 3.89e-01 100.0% 75.5%
3mkkA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 50.0 3.71e-01 100.0% 80.4%
1n7kA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 50.0 4.19e-01 96.4% 58.5%
3ktnA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 51.0 3.84e-01 100.0% 53.8%
3fkfD00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 33.0 3.33e-01 73.4% 56.9%
4gm6A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 50.0 3.84e-01 100.0% 54.7%
5xgbA03 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.55 47.0 3.91e-01 93.5% 67.9%
3zo9A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 50.0 3.62e-01 100.0% 73.1%
1ni5A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 47.0 4.07e-01 95.0% 65.6%
3f4aA00 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.55 40.0 3.98e-01 75.5% 75.7%
1ea9C02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 49.0 3.78e-01 100.0% 73.3%
3sy8C02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.54 48.0 3.97e-01 97.1% 66.3%
6gs8A01 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.53 47.0 3.69e-01 96.4% 74.2%
4hu4A00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.53 46.0 3.89e-01 97.1% 62.3%
3weoA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 47.0 3.58e-01 99.3% 84.8%
3s83A00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.53 47.0 3.88e-01 99.3% 74.6%
3pfmA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.53 45.0 3.81e-01 95.0% 66.7%
4mj7B00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.53 40.0 3.90e-01 89.2% 72.5%
2y0eB03 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 45.0 3.91e-01 93.5% 73.5%
6hq7B02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.53 47.0 3.85e-01 99.3% 66.5%
1ekeA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 36.0 3.37e-01 70.5% 86.5%
3t5tA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.52 46.0 4.16e-01 96.4% 93.1%
1ojxE00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 46.0 3.81e-01 99.3% 68.3%
4fhdA02 3.80.30.30 Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › 0.51 45.0 3.84e-01 96.4% 86.3%
1bifA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 46.0 4.04e-01 97.8% 80.1%
5lqdA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.50 44.0 3.84e-01 94.2% 86.5%
ECOD (87)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
178870 2007.5.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.84 80.0 6.47e-01 100.0% 68.8%
4999654 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.84 79.0 6.74e-01 100.0% 69.0%
5037295 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.83 79.0 6.85e-01 100.0% 74.5%
2755358 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.83 76.0 6.59e-01 96.4% 75.5%
4870260 2007.5.1.5 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › DUF459 0.82 76.0 6.43e-01 97.1% 75.7%
1492214 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.82 77.0 6.88e-01 98.6% 75.5%
3183799 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.82 76.0 6.22e-01 98.6% 74.6%
4020091 2007.5.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase 0.82 77.0 6.21e-01 99.3% 65.7%
4017791 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.81 76.0 6.47e-01 100.0% 73.0%
4145907 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.81 74.0 6.82e-01 97.1% 79.3%
3180352 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.81 76.0 6.14e-01 99.3% 60.9%
1144534 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.81 76.0 6.39e-01 100.0% 70.8%
3968608 2007.5.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.80 75.0 6.15e-01 99.3% 69.2%
4974344 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.80 74.0 6.71e-01 98.6% 75.0%
1411712 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.80 72.0 6.62e-01 95.7% 75.4%
3002691 2007.5.1.5 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › DUF459 0.80 75.0 6.32e-01 100.0% 75.2%
3291200 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.80 75.0 6.28e-01 100.0% 62.2%
1682152 2007.5.1.14 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › OSK 0.79 73.0 6.26e-01 97.8% 70.3%
4624410 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.75 67.0 5.95e-01 98.6% 68.2%
3983672 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.74 67.0 6.04e-01 100.0% 72.3%
2429326 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.74 56.0 4.98e-01 81.3% 56.4%
3970553 2007.5.1.23 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › SGNH 0.72 66.0 5.54e-01 100.0% 73.2%
5024101 2006.1.6.12 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.71 53.0 4.67e-01 100.0% 53.2%
5071249 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.68 49.0 4.66e-01 95.7% 64.4%
4997976 2006.1.6.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.67 51.0 4.55e-01 100.0% 55.5%
4453324 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.67 54.0 4.52e-01 98.6% 49.0%
1787656 2003.1.6.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin 0.66 55.0 4.94e-01 99.3% 65.2%
5053229 2004.1.1.119 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA 0.66 53.0 5.26e-01 100.0% 81.3%
1888605 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.65 45.0 3.43e-01 71.2% 71.1%
3420411 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.64 45.0 5.08e-01 87.1% 99.0%
3737572 2006.1.6.4 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Ku_N 0.64 48.0 4.19e-01 99.3% 51.2%
3038099 2006.1.1.11 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.64 37.0 4.68e-01 84.9% 97.5%
3696130 2006.1.6.12 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.64 52.0 4.37e-01 100.0% 50.8%
4993915 2003.1.6.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin 0.64 58.0 5.59e-01 99.3% 91.0%
4971996 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.64 51.0 4.52e-01 99.3% 57.9%
3190760 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.63 57.0 4.11e-01 100.0% 80.0%
3597502 2003.1.6.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like 0.63 57.0 4.51e-01 100.0% 49.7%
4983971 2002.1.1.142 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MTTB 0.63 54.0 3.67e-01 92.1% 33.6%
3282757 2002.1.1.143 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Met_asp_mut_E 0.62 52.0 3.73e-01 89.2% 41.2%
5055617 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.62 56.0 4.55e-01 99.3% 62.3%
3731893 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.62 52.0 4.16e-01 92.1% 57.9%
3702525 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 47.0 4.57e-01 92.1% 72.3%
3599617 129.1.1.0 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like 0.62 56.0 4.17e-01 99.3% 59.1%
4124153 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.61 53.0 4.18e-01 95.7% 44.3%
3695859 2005.1.1.38 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTU2 0.61 51.0 3.96e-01 92.1% 50.8%
3664784 2002.1.1.254 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GH5_mannosidase 0.61 55.0 3.92e-01 99.3% 80.4%
3259639 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.61 46.0 3.94e-01 92.8% 48.3%
1839421 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.61 52.0 4.05e-01 94.2% 82.3%
None — 0.61 52.0 4.30e-01 95.7% 50.8%
3957843 2002.1.1.152 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_3 0.61 55.0 3.86e-01 100.0% 68.1%
5023953 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.60 55.0 4.11e-01 95.7% 47.0%
3489889 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.60 52.0 5.00e-01 95.7% 82.5%
4029826 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.60 53.0 4.03e-01 96.4% 47.4%
5004773 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 37.0 4.15e-01 89.9% 78.2%
1555450 2002.1.1.67 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pro_dh 0.59 54.0 3.96e-01 100.0% 56.8%
4439833 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.59 55.0 4.38e-01 100.0% 68.4%
3249180 2003.1.5.30 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 0.59 46.0 3.47e-01 87.8% 33.0%
3783666 2003.1.5.26 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 0.59 44.0 3.13e-01 90.6% 25.1%
5073822 7512.1.1.2 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Phosphorylase 0.59 39.0 3.82e-01 78.4% 60.0%
3949150 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.59 54.0 3.67e-01 100.0% 49.5%
3688986 2003.1.1.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA 0.59 53.0 4.11e-01 98.6% 48.9%
4264240 2002.1.1.53 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.58 44.0 3.79e-01 86.3% 50.9%
4979031 7601.1.1.2 ↗ a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › DUF362 0.57 47.0 3.63e-01 89.2% 60.3%
4996597 7601.1.1.2 ↗ a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › DUF362 0.57 49.0 3.89e-01 95.7% 46.5%
5075916 2002.1.1.134 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.57 51.0 4.06e-01 100.0% 66.7%
4286296 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.56 51.0 3.59e-01 99.3% 77.8%
5009468 2002.1.1.134 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.56 50.0 4.12e-01 99.3% 69.4%
4115681 2003.1.1.120 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD-bd_HRPKS_sdrA 0.56 51.0 4.71e-01 98.6% 79.4%
3744037 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.56 50.0 3.57e-01 99.3% 79.8%
3484303 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.56 47.0 4.25e-01 89.9% 68.9%
3248343 7512.1.1.53 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › ALG11_N 0.56 42.0 3.32e-01 79.9% 37.6%
5073515 7601.1.1.2 ↗ a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › DUF362 0.56 48.0 3.66e-01 92.8% 40.9%
3812402 2002.1.1.19 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_17 0.56 50.0 4.37e-01 97.1% 91.2%
4945466 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 41.0 3.56e-01 77.0% 51.6%
3716820 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.55 44.0 3.57e-01 86.3% 63.9%
5017979 2007.2.1.6 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_5 0.54 48.0 4.52e-01 100.0% 95.4%
3373856 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.54 47.0 3.79e-01 97.8% 70.2%
4098681 2485.1.1.4 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.54 34.0 3.32e-01 71.2% 55.0%
5071740 2007.2.1.6 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_5 0.53 48.0 4.37e-01 99.3% 97.8%
3797442 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.53 39.0 3.43e-01 76.3% 98.1%
3821439 2008.1.1.7 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.53 47.0 4.34e-01 97.1% 80.6%
3702608 2008.1.1.7 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.52 46.0 4.01e-01 97.1% 63.1%
5003387 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.51 46.0 4.42e-01 100.0% 98.1%
5024746 7512.1.1.6 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.51 43.0 3.72e-01 91.4% 81.4%
4197082 7510.1.1.1 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh 0.50 42.0 3.93e-01 92.1% 73.5%
3759530 148.1.3.208 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_NAV1 0.50 38.0 3.08e-01 79.9% 53.8%
3739233 7512.1.1.6 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.50 42.0 3.68e-01 92.1% 84.2%
D4 medium residues 499-585
PDB
D5 medium residues 717-789
PDB