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OP947161.1__WBC28474.1__RPMD05_87__00088

Bact-Vir

OP947161.1__WBC28474.1__RPMD05_87__00088

Identity

Accession:
OP947161 ↗
Kingdom:
phage

Quality

79.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhodobacteraceae_phage_LS06-2018-MD05

TaxID: 3003838

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 100-206
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_5191495_prodigal-single.1__X__X__00127__D196-310
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yu0A02 2.80.20.10 Mainly Beta › Trefoil › Tail fiber receptor-binding protein › Tail fiber receptor-binding protein 0.70 61.0 5.51e-01 95.3% 80.1%
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 58.0 5.60e-01 100.0% 90.9%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.52 42.0 3.82e-01 91.6% 98.7%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 29.0 3.23e-01 95.3% 69.6%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038875 4166.1.1.0 ↗ beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like 0.75 66.0 6.48e-01 94.4% 87.0%
393101 4166.1.1.3 ↗ beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Gp22 0.64 57.0 5.45e-01 100.0% 86.6%
5072132 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.56 32.0 3.72e-01 86.0% 76.2%
3505835 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.55 45.0 3.45e-01 88.8% 87.1%
D2 high residues 220-372
PDB
Domain cluster: rep: LacPavin_0818_WC45_scaffold_160996_curated_closed_complete_prodigal-single.1__X__X__00808__D1309-1457
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zruC01 2.60.520.10 Mainly Beta › Sandwich › Triple-stranded beta-helix › Phage fibre proteins 0.66 45.0 4.90e-01 97.4% 81.5%
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 44.0 4.90e-01 97.4% 88.4%
2mj0A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.53 24.0 3.39e-01 85.0% 93.9%
1a70A00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.53 26.0 3.17e-01 73.2% 70.1%
1kbaA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.52 24.0 3.33e-01 84.3% 95.5%
4el6A00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.51 25.0 3.12e-01 91.5% 73.2%
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.51 26.0 3.55e-01 86.3% 100.0%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038875 4166.1.1.0 ↗ beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like 0.86 56.0 6.43e-01 97.4% 87.8%
2042 4166.1.1.2 ↗ beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Caudo_bapla_N 0.67 46.0 4.99e-01 97.4% 82.2%
3319149 224.1.1.3 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Staygreen 0.51 36.0 3.62e-01 71.9% 86.5%
D3 high residues 481-600
PDB
Domain cluster: rep: JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00003__D17-151