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OP947163.1__WBK39936.1__X__00010
Bact-VirOP947163.1__WBK39936.1__X__00010
Identity
- Accession:
- OP947163 ↗
- Kingdom:
- phage
Quality
82.0
mean pLDDT
Taxonomy
TaxID: 3003840
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-83
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3r2qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 45.0 | 4.08e-01 | 80.8% | 91.2% |
| 7qaqA01 | 3.40.50.11710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase | 0.59 | 40.0 | 2.90e-01 | 74.4% | 25.8% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.59 | 41.0 | 3.86e-01 | 74.4% | 59.6% |
| 4aifA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.59 | 45.0 | 3.71e-01 | 83.3% | 64.6% |
| 2lpeA01 | 6.10.140.1120 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 41.0 | 4.17e-01 | 75.6% | 84.6% |
| 2v0cA04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.57 | 40.0 | 3.20e-01 | 74.4% | 35.8% |
| 1s9qA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.56 | 46.0 | 3.43e-01 | 94.9% | 86.2% |
| 4epzA00 | 1.25.40.810 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ | 0.56 | 44.0 | 3.58e-01 | 87.2% | 72.7% |
| 1n1cA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.56 | 38.0 | 3.75e-01 | 74.4% | 65.9% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.56 | 38.0 | 3.85e-01 | 70.5% | 81.6% |
| 3v5uA01 | 6.10.280.80 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region | 0.55 | 37.0 | 3.81e-01 | 70.5% | 75.0% |
| 1kt1A03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 41.0 | 3.35e-01 | 83.3% | 54.4% |
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.54 | 39.0 | 3.40e-01 | 74.4% | 92.5% |
| 2uvaG01 | 1.20.1050.120 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 41.0 | 3.46e-01 | 100.0% | 47.8% |
| 3f5cB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.53 | 40.0 | 3.05e-01 | 79.5% | 33.9% |
| 3myvA01 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 44.0 | 3.28e-01 | 97.4% | 87.3% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 40.0 | 3.51e-01 | 80.8% | 74.2% |
| 1sg6A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.52 | 42.0 | 3.18e-01 | 88.5% | 80.7% |
| 1navA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.52 | 44.0 | 3.20e-01 | 98.7% | 84.2% |
| 8gr7A01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.52 | 43.0 | 2.97e-01 | 98.7% | 77.9% |
| 3pe0A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 37.0 | 3.34e-01 | 74.4% | 69.8% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.51 | 32.0 | 3.13e-01 | 70.5% | 55.7% |
| 3vvaA00 | 1.20.1260.140 | Mainly Alpha › Up-down Bundle › Ferritin › Alternative oxidase | 0.50 | 38.0 | 2.73e-01 | 83.3% | 54.9% |
| 1yowA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.50 | 42.0 | 3.04e-01 | 93.6% | 85.7% |
| 1grlB01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.50 | 43.0 | 3.13e-01 | 100.0% | 76.6% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3387205 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.63 | 41.0 | 3.92e-01 | 70.5% | 57.8% |
| 4016253 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.62 | 45.0 | 4.12e-01 | 76.9% | 95.2% |
| 3473297 | 109.4.1.60 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rcd1 | 0.60 | 51.0 | 3.48e-01 | 97.4% | 38.1% |
| 3529736 | 3755.3.1.316 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › ATRX_C | 0.58 | 39.0 | 3.35e-01 | 70.5% | 73.8% |
| 4024393 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.58 | 41.0 | 4.14e-01 | 85.9% | 73.8% |
| 3728803 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.58 | 42.0 | 3.35e-01 | 76.9% | 76.9% |
| 3848799 | 3755.2.1.4 ↗ | alpha bundles › YscO-like › Flagellar FliJ protein › Flagellar FliJ protein › PF26143 | 0.58 | 39.0 | 3.29e-01 | 70.5% | 70.4% |
| 4301876 | 109.6.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF_N | 0.57 | 49.0 | 3.59e-01 | 96.2% | 53.5% |
| 3718051 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 43.0 | 2.92e-01 | 82.1% | 46.1% |
| 3473869 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.57 | 40.0 | 3.30e-01 | 76.9% | 79.4% |
| 60156 | 109.10.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Translin › Translin | 0.56 | 42.0 | 3.11e-01 | 80.8% | 52.6% |
| 3740611 | 109.62.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › AFF4 C-terminal homology domain › AFF4 C-terminal homology domain › Ebp1_C | 0.56 | 40.0 | 2.94e-01 | 76.9% | 44.8% |
| 4197529 | 4992.1.1.23 ↗ | extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N | 0.54 | 36.0 | 3.27e-01 | 70.5% | 49.1% |
| 3975121 | 604.2.1.1 ↗ | alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C | 0.54 | 39.0 | 3.48e-01 | 78.2% | 53.9% |
| 3711734 | 3755.3.1.297 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9 | 0.54 | 37.0 | 2.89e-01 | 70.5% | 35.2% |
| 5031064 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.53 | 40.0 | 3.69e-01 | 80.8% | 97.0% |
| 3935027 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.52 | 37.0 | 3.49e-01 | 76.9% | 69.0% |
| 3988260 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.52 | 33.0 | 2.25e-01 | 70.5% | 15.7% |