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OP947165.1__WBC28511.1__TPMD03_39__00040

Bact-Vir

OP947165.1__WBC28511.1__TPMD03_39__00040

Identity

Accession:
OP947165 ↗
Kingdom:
phage

Quality

61.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thiohalocapsa_phage_LS06-2018-MD03

TaxID: 3003841

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-59
PDB
D2 high residues 86-156
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 46.0 4.81e-01 71.8% 100.0%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 46.0 4.91e-01 71.8% 100.0%
1ljoA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.47e-01 73.2% 93.3%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.62 47.0 4.26e-01 80.3% 91.6%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 41.0 4.48e-01 70.4% 100.0%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.61 51.0 4.13e-01 95.8% 95.2%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.60 43.0 4.30e-01 76.1% 86.5%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.60 49.0 3.97e-01 94.4% 99.3%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 5.01e-01 85.9% 100.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.38e-01 80.3% 100.0%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 44.0 3.99e-01 83.1% 98.0%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 4.35e-01 73.2% 96.6%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.58 44.0 3.08e-01 81.7% 31.0%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.66e-01 88.7% 86.3%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.58 44.0 4.12e-01 98.6% 65.9%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.57 50.0 4.33e-01 97.2% 96.4%
1ep3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 42.0 3.89e-01 81.7% 97.0%
3meuB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 4.61e-01 91.5% 100.0%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 4.21e-01 91.5% 76.2%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 45.0 3.47e-01 90.1% 57.7%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 41.0 4.08e-01 83.1% 98.7%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 43.0 4.19e-01 87.3% 86.3%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 4.10e-01 88.7% 84.9%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 4.15e-01 100.0% 70.0%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 40.0 2.70e-01 83.1% 31.7%
2dsiA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.53 44.0 3.61e-01 100.0% 62.3%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 4.14e-01 81.7% 100.0%
2jh1A01 3.90.640.70 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.52 43.0 3.79e-01 93.0% 61.1%
2hw0A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.52 40.0 3.47e-01 85.9% 89.6%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 40.0 2.69e-01 90.1% 35.4%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 4.25e-01 93.0% 100.0%
1mxgA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 37.0 3.41e-01 80.3% 71.4%
2h0eB00 2.60.40.180 Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain 0.50 38.0 3.36e-01 84.5% 61.1%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3500684 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.72 52.0 5.05e-01 76.1% 83.7%
3482360 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 49.0 4.56e-01 71.8% 88.9%
3301015 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 47.0 4.94e-01 71.8% 100.0%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.69 51.0 5.04e-01 78.9% 93.3%
3342430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 51.0 5.06e-01 78.9% 85.3%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 53.0 5.56e-01 83.1% 100.0%
3818428 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.68 52.0 5.11e-01 81.7% 88.0%
3824346 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 51.0 4.95e-01 81.7% 83.7%
3478898 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 49.0 5.14e-01 77.5% 92.3%
3501312 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 46.0 4.81e-01 71.8% 100.0%
5034040 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 48.0 5.33e-01 78.9% 100.0%
3541241 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.66 48.0 5.19e-01 77.5% 93.3%
4940673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 48.0 5.08e-01 78.9% 100.0%
3372243 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 51.0 4.96e-01 85.9% 83.7%
3290899 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 47.0 4.77e-01 77.5% 95.7%
4957377 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.65 46.0 4.82e-01 74.6% 87.3%
3549321 4.11.1.5 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.64 48.0 3.75e-01 81.7% 45.0%
3855972 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.64 47.0 4.92e-01 77.5% 86.2%
4629022 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.64 47.0 4.82e-01 78.9% 82.9%
3485761 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 45.0 3.37e-01 74.6% 51.1%
3828749 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 45.0 4.52e-01 77.5% 94.7%
3740784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 52.0 4.89e-01 91.5% 91.8%
3628119 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.62 45.0 4.40e-01 78.9% 90.0%
3793656 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.62 46.0 3.71e-01 80.3% 43.4%
3595283 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 46.0 3.93e-01 80.3% 63.5%
4002985 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.90e-01 78.9% 100.0%
3662854 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.60 46.0 3.51e-01 81.7% 86.1%
3262455 1.1.7.90 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 0.60 43.0 3.92e-01 77.5% 97.0%
3607985 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 44.0 3.89e-01 78.9% 65.7%
3298989 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 45.0 3.89e-01 81.7% 60.9%
3407820 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 47.0 4.51e-01 97.2% 74.1%
3926175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.58e-01 90.1% 76.5%
3833030 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.59 45.0 3.66e-01 81.7% 81.5%
3936468 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 49.0 4.46e-01 95.8% 71.0%
3934671 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.58 44.0 4.16e-01 81.7% 84.7%
5037456 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.58 47.0 3.73e-01 88.7% 82.8%
3266698 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.58 47.0 3.83e-01 90.1% 63.7%
3340540 1.1.17.19 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Nal1_C 0.57 43.0 2.92e-01 81.7% 65.8%
3939093 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.57 43.0 4.28e-01 81.7% 93.3%
4946268 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 44.0 4.07e-01 85.9% 100.0%
3913687 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 45.0 4.24e-01 93.0% 71.1%
3672526 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 43.0 3.69e-01 85.9% 91.2%
3891158 1.1.7.90 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 0.56 41.0 3.57e-01 80.3% 89.6%
3823780 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.55 46.0 4.56e-01 93.0% 100.0%
153172 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 46.0 4.28e-01 97.2% 74.4%
3587030 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 4.38e-01 88.7% 100.0%
3414912 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 46.0 4.06e-01 97.2% 66.7%
3394215 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 45.0 4.12e-01 100.0% 74.0%
3504586 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.53 41.0 3.25e-01 85.9% 53.5%
5015298 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 35.0 3.95e-01 71.8% 96.0%
4950699 3613.1.1.0 ↗ beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.53 45.0 4.32e-01 98.6% 89.4%
5031810 3613.1.1.0 ↗ beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.53 45.0 4.48e-01 98.6% 96.0%
4854090 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.51 40.0 3.19e-01 85.9% 56.1%
3231920 11.10.1.4 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › TRAF-mep_MATH 0.51 39.0 2.99e-01 85.9% 78.9%