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OP947165.1__WBC28529.1__TPMD03_55__00056
Bact-VirOP947165.1__WBC28529.1__TPMD03_55__00056
Identity
- Accession:
- OP947165 ↗
- Kingdom:
- phage
Quality
87.0
mean pLDDT
Taxonomy
TaxID: 3003841
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 173-249
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e8oD00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.70 | 33.0 | 3.34e-01 | 72.7% | 43.4% |
| 6o38A02 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.70 | 60.0 | 5.71e-01 | 96.1% | 84.8% |
| 2ci8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.66 | 45.0 | 5.18e-01 | 96.1% | 98.2% |
| 2ewvA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.64 | 40.0 | 3.65e-01 | 81.8% | 48.0% |
| 1id2A00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.60 | 46.0 | 4.22e-01 | 85.7% | 66.0% |
| 2e7mA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 36.0 | 3.33e-01 | 87.0% | 45.6% |
| 3vl9B00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.58 | 45.0 | 3.35e-01 | 87.0% | 80.5% |
| 1olrA00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.58 | 45.0 | 3.33e-01 | 87.0% | 81.6% |
| 3nwsA01 | 2.40.50.800 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 48.0 | 4.04e-01 | 96.1% | 91.5% |
| 6lbrA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 48.0 | 3.60e-01 | 93.5% | 67.5% |
| 3nswA00 | 2.40.50.780 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 37.0 | 3.38e-01 | 70.1% | 69.8% |
| 3a57A00 | 2.60.270.30 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Vibrio parahaemolyticus thermostable direct hemolysin | 0.55 | 40.0 | 3.27e-01 | 100.0% | 39.6% |
| 4dixA01 | 2.60.40.2700 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 37.0 | 3.54e-01 | 71.4% | 65.5% |
| 2ya0A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 37.0 | 3.08e-01 | 71.4% | 72.7% |
| 3htxA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 33.0 | 3.33e-01 | 71.4% | 63.2% |
| 3ty4B00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.52 | 43.0 | 2.91e-01 | 100.0% | 79.3% |
| 3zyyX03 | 3.10.20.880 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 44.0 | 4.32e-01 | 98.7% | 92.0% |
| 4liqE05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 3.20e-01 | 71.4% | 75.0% |
| 4i2yA01 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.51 | 44.0 | 3.17e-01 | 98.7% | 81.8% |
| 7vd7A01 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.50 | 34.0 | 3.25e-01 | 87.0% | 58.7% |
| 4c23B01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 40.0 | 3.04e-01 | 96.1% | 97.4% |
| 2nncA00 | 2.60.40.2470 | Mainly Beta › Sandwich › Immunoglobulin-like › SoxY domain | 0.50 | 41.0 | 3.59e-01 | 87.0% | 97.3% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938033 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.71 | 56.0 | 5.04e-01 | 85.7% | 95.4% |
| 5030508 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.71 | 57.0 | 4.29e-01 | 87.0% | 89.2% |
| 2581338 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.71 | 61.0 | 5.73e-01 | 97.4% | 83.3% |
| 5056110 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.70 | 55.0 | 4.57e-01 | 84.4% | 74.1% |
| 3804101 | 1.1.11.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like | 0.70 | 47.0 | 3.89e-01 | 70.1% | 87.9% |
| 4586546 | 259.1.1.2 ↗ | a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain › Ribosomal_L31e | 0.68 | 46.0 | 4.43e-01 | 70.1% | 97.8% |
| 3946821 | 211.1.1.2 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › YecM | 0.62 | 34.0 | 3.35e-01 | 71.4% | 48.8% |
| 3737241 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 44.0 | 2.72e-01 | 76.6% | 11.8% |
| 3515104 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.61 | 37.0 | 3.49e-01 | 87.0% | 47.5% |
| 4482101 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.60 | 41.0 | 3.39e-01 | 70.1% | 50.4% |
| 4377808 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.60 | 40.0 | 3.41e-01 | 70.1% | 51.1% |
| 3699932 | 2003.1.5.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TPMT | 0.59 | 46.0 | 3.27e-01 | 85.7% | 74.9% |
| 1178512 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.59 | 40.0 | 3.37e-01 | 70.1% | 51.9% |
| 4116705 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.58 | 50.0 | 4.52e-01 | 100.0% | 83.3% |
| 3172150 | 2.1.1.23 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1 | 0.57 | 48.0 | 3.64e-01 | 94.8% | 69.2% |
| 5016329 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.57 | 38.0 | 4.02e-01 | 70.1% | 97.1% |
| 4240075 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.56 | 38.0 | 3.17e-01 | 70.1% | 50.7% |
| 4026230 | 3156.3.1.2 ↗ | beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family › s48_45 | 0.56 | 42.0 | 3.60e-01 | 85.7% | 95.0% |
| 4935901 | 2.1.1.382 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28814 | 0.53 | 40.0 | 3.85e-01 | 83.1% | 98.9% |
| 3501631 | 896.1.1.2 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 | 0.52 | 36.0 | 3.33e-01 | 72.7% | 56.0% |
| 3402748 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.52 | 37.0 | 2.94e-01 | 76.6% | 52.6% |
| 1565064 | 11.4.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) | 0.51 | 40.0 | 3.32e-01 | 88.3% | 74.2% |
| 4465638 | 2011.2.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 | 0.51 | 39.0 | 2.84e-01 | 85.7% | 77.5% |
| 3827292 | 7544.1.1.0 ↗ | a/b three-layered sandwiches › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | 0.50 | 43.0 | 2.92e-01 | 100.0% | 65.1% |
D2
medium
residues 18-96
Domain cluster:
representative
D3
medium
residues 97-153
Domain cluster:
rep: OR515479.1__WNL63470.1__X__00194__D454-499
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wvvB01 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.83 | 63.0 | 6.80e-01 | 91.2% | 95.8% |
| 1goiB03 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.81 | 63.0 | 6.63e-01 | 91.2% | 92.2% |
| 3wx7A02 | 2.10.10.90 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.77 | 67.0 | 5.58e-01 | 94.7% | 69.5% |
| 1aiwA00 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.74 | 60.0 | 5.83e-01 | 87.7% | 87.1% |
| 4oj5A02 | 2.10.10.80 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.72 | 62.0 | 5.78e-01 | 98.2% | 97.2% |
| 1ed7A00 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.71 | 52.0 | 5.61e-01 | 80.7% | 100.0% |
| 2rtsA00 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.70 | 59.0 | 5.45e-01 | 93.0% | 86.3% |
| 1yueA02 | 2.10.10.40 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.69 | 55.0 | 5.46e-01 | 89.5% | 98.4% |
| 7ecrA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.62 | 49.0 | 3.56e-01 | 93.0% | 44.3% |
| 2nqwA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.61 | 42.0 | 3.73e-01 | 86.0% | 48.3% |
| 2apoA01 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.57 | 46.0 | 3.94e-01 | 93.0% | 77.8% |
| 2q07A03 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.55 | 42.0 | 4.13e-01 | 91.2% | 100.0% |
| 2p4pA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.51 | 41.0 | 3.67e-01 | 91.2% | 97.6% |
| 3r90A00 | 3.10.400.20 | Alpha Beta › Roll › Sulfate adenylyltransferase › | 0.51 | 41.0 | 3.04e-01 | 100.0% | 46.5% |
| 2b39A13 | 2.40.50.120 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 34.0 | 2.66e-01 | 70.2% | 67.6% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1322863 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.85 | 65.0 | 7.13e-01 | 82.5% | 100.0% |
| 5026481 | 64.3.1.3 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 | 0.81 | 62.0 | 6.57e-01 | 91.2% | 92.0% |
| 4026053 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.80 | 52.0 | 6.06e-01 | 75.4% | 95.0% |
| 2389402 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.80 | 62.0 | 6.39e-01 | 91.2% | 87.0% |
| 3972100 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.79 | 62.0 | 5.94e-01 | 91.2% | 73.8% |
| 1322862 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.79 | 61.0 | 6.52e-01 | 84.2% | 97.9% |
| 4307941 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.79 | 64.0 | 6.37e-01 | 87.7% | 100.0% |
| 4009007 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.78 | 61.0 | 6.51e-01 | 89.5% | 96.0% |
| 4110715 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.78 | 62.0 | 6.13e-01 | 86.0% | 81.4% |
| 3971347 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.78 | 63.0 | 6.33e-01 | 89.5% | 86.2% |
| 4233290 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.76 | 61.0 | 6.50e-01 | 91.2% | 100.0% |
| 1694867 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.75 | 61.0 | 6.30e-01 | 87.7% | 94.3% |
| 4009008 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.75 | 58.0 | 5.93e-01 | 84.2% | 96.4% |
| 8553 | 64.3.1.3 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 | 0.74 | 60.0 | 5.83e-01 | 87.7% | 87.1% |
| 3976685 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.72 | 61.0 | 6.26e-01 | 91.2% | 100.0% |
| 4009012 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.71 | 60.0 | 5.81e-01 | 93.0% | 84.4% |
| 3981632 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.71 | 45.0 | 5.13e-01 | 78.9% | 92.5% |
| 1291025 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.70 | 59.0 | 5.45e-01 | 93.0% | 86.3% |
| 2966957 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.68 | 56.0 | 4.76e-01 | 89.5% | 64.1% |
| 4635070 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.62 | 49.0 | 4.55e-01 | 89.5% | 100.0% |
| 3934136 | 304.31.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase | 0.61 | 54.0 | 3.83e-01 | 100.0% | 53.9% |
| 3222227 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.61 | 43.0 | 2.69e-01 | 80.7% | 13.2% |
| 4375569 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.58 | 48.0 | 4.36e-01 | 94.7% | 98.8% |
| 3476787 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.58 | 49.0 | 4.33e-01 | 96.5% | 96.5% |
| 4997514 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.55 | 42.0 | 3.80e-01 | 91.2% | 85.6% |
| 4927128 | 2.3.1.0 ↗ | beta barrels › OB-fold › TIMP-like › TIMP-like | 0.51 | 34.0 | 2.92e-01 | 70.2% | 81.0% |
| 3389277 | 2007.1.2.30 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › IR75A_N | 0.51 | 43.0 | 3.10e-01 | 98.2% | 37.1% |
| 3940712 | 5.1.4.223 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd | 0.50 | 39.0 | 2.19e-01 | 87.7% | 12.2% |