←Back to structures
OP966821.1__WBC28687.1__X__00058
Bact-VirOP966821.1__WBC28687.1__X__00058
Identity
- Accession:
- OP966821 ↗
- Kingdom:
- phage
Quality
91.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-74
Domain cluster:
rep: IMGVR_UViG_3300025818_001172-3300025818-Ga0208542_10026784__D42-116
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05772.18 best | NinB | 86.0 | 2.80e-24 | 100.0% | 60.3% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pc6A00 | 1.10.3790.10 | Mainly Alpha › Orthogonal Bundle › NinB fold › NinB | 0.89 | 84.0 | 6.59e-01 | 100.0% | 53.2% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.57 | 34.0 | 2.99e-01 | 100.0% | 39.4% |
| 2pffB05 | 3.30.70.2430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 40.0 | 4.35e-01 | 95.9% | 91.8% |
| 4jn3A01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.56 | 49.0 | 3.58e-01 | 100.0% | 67.9% |
| 1j72A01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.55 | 43.0 | 3.76e-01 | 83.8% | 67.0% |
| 3e82E02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 45.0 | 3.29e-01 | 93.2% | 72.5% |
| 3mwmA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 35.0 | 3.51e-01 | 91.9% | 66.7% |
| 2greA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.52 | 47.0 | 3.30e-01 | 100.0% | 58.9% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.52 | 40.0 | 3.75e-01 | 83.8% | 83.0% |
| 4mfzA02 | 3.40.630.120 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › | 0.52 | 31.0 | 2.52e-01 | 94.6% | 29.9% |
| 3pieA02 | 3.30.1370.250 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.52 | 40.0 | 3.68e-01 | 85.1% | 95.0% |
| 2dy1A03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.52 | 38.0 | 3.81e-01 | 97.3% | 77.6% |
| 6lpnA04 | 3.30.70.2740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 43.0 | 3.96e-01 | 100.0% | 72.6% |
| 1b44D00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 34.0 | 3.06e-01 | 83.8% | 49.1% |
| 2hiyA01 | 3.30.70.1280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SP0830-like domains | 0.51 | 39.0 | 3.79e-01 | 98.6% | 72.7% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3981752 | 829.1.1.1 ↗ | a+b duplicates or obligate multimers › NinB › NinB › NinB › NinB | 0.90 | 85.0 | 6.84e-01 | 100.0% | 60.8% |
| 7698 | 829.1.1.1 ↗ | a+b duplicates or obligate multimers › NinB › NinB › NinB › NinB | 0.89 | 84.0 | 6.59e-01 | 100.0% | 53.2% |
| 3963879 | 829.1.1.1 ↗ | a+b duplicates or obligate multimers › NinB › NinB › NinB › NinB | 0.84 | 74.0 | 7.08e-01 | 100.0% | 83.5% |
| 5079949 | 829.1.1.3 ↗ | a+b duplicates or obligate multimers › NinB › NinB › NinB › DUF1367 | 0.71 | 62.0 | 5.78e-01 | 100.0% | 78.9% |
| 3980273 | 829.1.1.3 ↗ | a+b duplicates or obligate multimers › NinB › NinB › NinB › DUF1367 | 0.68 | 60.0 | 5.11e-01 | 100.0% | 61.6% |
| 4641056 | 885.1.1.1 ↗ | a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › NusA_N | 0.64 | 57.0 | 4.80e-01 | 100.0% | 96.0% |
| 3333678 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 34.0 | 4.16e-01 | 97.3% | 86.7% |
| 3987428 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.60 | 35.0 | 3.21e-01 | 87.8% | 43.0% |
| 3668622 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.58 | 51.0 | 4.19e-01 | 100.0% | 79.3% |
| 5037971 | 309.1.2.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain | 0.58 | 45.0 | 3.71e-01 | 87.8% | 48.8% |
| 4344883 | 320.4.1.1 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › TIMELESS_C | 0.57 | 43.0 | 3.79e-01 | 82.4% | 83.6% |
| 3279061 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.56 | 39.0 | 4.06e-01 | 97.3% | 78.6% |
| 4509594 | 304.28.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG | 0.54 | 42.0 | 4.08e-01 | 100.0% | 74.1% |
| 4935885 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.54 | 47.0 | 3.11e-01 | 100.0% | 53.4% |
| 4424185 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.53 | 47.0 | 4.19e-01 | 100.0% | 93.5% |
| 4019036 | 304.3.1.15 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › PF31052 | 0.53 | 42.0 | 4.33e-01 | 100.0% | 90.0% |
| 3291096 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.53 | 36.0 | 4.17e-01 | 83.8% | 96.4% |
| 3996298 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 43.0 | 4.20e-01 | 100.0% | 83.7% |
| 4542856 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.52 | 45.0 | 2.87e-01 | 100.0% | 80.0% |
| 4341664 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.52 | 41.0 | 4.02e-01 | 100.0% | 80.0% |
| 4043003 | 601.7.1.6 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › GlnD_UR_UTase | 0.52 | 46.0 | 3.55e-01 | 100.0% | 80.6% |
| 4173782 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.51 | 43.0 | 3.78e-01 | 94.6% | 60.9% |
| 5039294 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.51 | 44.0 | 3.03e-01 | 100.0% | 71.4% |
| 4928783 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.51 | 40.0 | 4.31e-01 | 98.6% | 98.4% |
| 3798494 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.51 | 38.0 | 3.61e-01 | 98.6% | 66.7% |
| 4202123 | 327.19.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C | 0.50 | 38.0 | 3.78e-01 | 100.0% | 76.2% |