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OQ055246.1__WEL95580.1__X__00086

Bact-Vir

OQ055246.1__WEL95580.1__X__00086

Identity

Accession:
OQ055246 ↗
Kingdom:
phage

Quality

81.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 59-114
PDB
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gccA00 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.68 59.0 5.68e-01 98.2% 85.7%
2oolA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.65 38.0 3.14e-01 85.7% 29.9%
5dynA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 53.0 4.45e-01 100.0% 57.5%
5tf2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 55.0 3.44e-01 100.0% 83.4%
2kc5A01 3.30.1460.40 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › [NiFe]-hydrogenase assembly chaperone, HybE 0.62 52.0 3.99e-01 96.4% 61.0%
3bzvB00 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.62 42.0 3.79e-01 96.4% 50.0%
3volA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 41.0 3.15e-01 71.4% 31.2%
5nslA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 48.0 2.93e-01 92.9% 29.9%
1wrjA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.60 38.0 3.61e-01 100.0% 52.2%
4ep4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 48.0 3.64e-01 100.0% 39.2%
7wrgB01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.58 46.0 2.85e-01 87.5% 23.2%
2v0uA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 48.0 3.54e-01 96.4% 35.6%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.57 46.0 3.47e-01 96.4% 61.6%
4ckbA01 3.30.470.140 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.57 45.0 3.35e-01 96.4% 83.1%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 43.0 3.94e-01 91.1% 61.3%
2jobA00 3.30.160.320 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 48.0 3.95e-01 98.2% 81.4%
2aujD03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 40.0 3.94e-01 94.6% 72.6%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 42.0 3.59e-01 94.6% 50.0%
2wkcB00 2.40.50.400 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein 0.54 40.0 3.52e-01 92.9% 51.7%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 44.0 4.11e-01 94.6% 75.7%
2lstA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 42.0 3.37e-01 92.9% 78.5%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 38.0 3.23e-01 75.0% 48.9%
1bf5A04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 44.0 3.65e-01 100.0% 68.1%
2l9pA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 42.0 3.16e-01 94.6% 91.5%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 43.0 4.06e-01 96.4% 74.6%
2qmqA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 44.0 2.92e-01 100.0% 27.7%
3ednA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 39.0 2.94e-01 82.1% 56.0%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 38.0 3.44e-01 85.7% 89.3%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.51 41.0 3.68e-01 89.3% 71.8%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 39.0 2.82e-01 87.5% 45.3%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 33.0 2.70e-01 100.0% 33.0%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 41.0 2.65e-01 92.9% 82.8%
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 41.0 2.57e-01 100.0% 66.6%
1ni7A00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.50 39.0 3.03e-01 92.9% 45.0%
2kinA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.50 40.0 2.65e-01 87.5% 55.0%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3861438 220.1.1.174 beta barrels › PH domain-like › PH domain-like › PH domain-like › Cybc1_Eros 0.72 64.0 4.93e-01 98.2% 46.7%
3947082 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.72 60.0 5.13e-01 92.9% 57.8%
4144852 220.1.1.126 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.70 62.0 5.00e-01 100.0% 51.9%
3968468 4152.2.1.0 a+b two layers › Shew3726-like › Uncharacterized protein CV_2116 › Uncharacterized protein CV_2116 0.70 59.0 5.40e-01 96.4% 74.7%
3607858 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.69 58.0 4.80e-01 96.4% 63.8%
4951189 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.69 49.0 5.09e-01 98.2% 84.0%
5075211 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.69 48.0 5.09e-01 98.2% 84.0%
3587376 386.1.1.344 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Arm-DNA-bind_4 0.68 57.0 5.82e-01 92.9% 98.2%
4961179 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.68 48.0 5.02e-01 98.2% 84.0%
4931302 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.68 47.0 4.96e-01 98.2% 84.0%
3606641 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 55.0 4.56e-01 96.4% 60.0%
3701914 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 55.0 4.71e-01 94.6% 74.7%
3413411 109.21.1.3 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C 0.66 45.0 2.62e-01 71.4% 43.8%
3622016 2484.5.1.6 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › Peptidase_A17 0.65 56.0 4.65e-01 100.0% 67.6%
3833283 2484.1.1.157 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.65 55.0 3.67e-01 100.0% 24.7%
3368394 4325.1.1.11 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF27041 0.64 54.0 4.66e-01 100.0% 73.7%
3941423 252.2.1.5 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.64 54.0 4.74e-01 94.6% 64.7%
3321360 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.64 54.0 4.98e-01 98.2% 92.0%
3291744 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.64 56.0 5.03e-01 100.0% 77.5%
3712993 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 50.0 4.70e-01 94.6% 72.0%
3338026 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 55.0 4.96e-01 100.0% 78.8%
3334247 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 53.0 4.31e-01 96.4% 63.6%
4436313 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.63 50.0 4.43e-01 94.6% 63.3%
3427136 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 4.07e-01 96.4% 56.9%
3307236 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 52.0 4.20e-01 100.0% 53.3%
5017465 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.62 43.0 3.38e-01 75.0% 65.6%
5002634 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.61 51.0 3.71e-01 100.0% 33.9%
4977517 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.61 46.0 4.17e-01 91.1% 61.3%
3320880 2004.1.1.299 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF1995 0.60 43.0 2.89e-01 92.9% 17.3%
5027780 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.60 48.0 4.75e-01 96.4% 90.0%
5029914 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.60 50.0 5.03e-01 96.4% 100.0%
3444104 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 48.0 3.06e-01 100.0% 16.2%
3973504 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.59 50.0 3.32e-01 100.0% 23.6%
4377115 5084.3.1.0 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter 0.59 50.0 2.71e-01 96.4% 5.2%
3383629 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 50.0 3.82e-01 96.4% 56.3%
5073342 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.58 50.0 4.06e-01 100.0% 53.5%
3875879 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 49.0 3.57e-01 100.0% 37.1%
5040752 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.58 46.0 3.70e-01 92.9% 83.2%
3326324 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.58 50.0 4.68e-01 100.0% 88.6%
3492441 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 48.0 4.42e-01 96.4% 70.7%
5080802 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.58 46.0 4.60e-01 96.4% 91.7%
5071102 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 40.0 3.39e-01 75.0% 67.0%
3271880 223.2.1.23 a+b three layers › Profilin-like › profilin-like › profilin-like › NPR3 0.57 46.0 3.34e-01 96.4% 31.1%
3315568 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.57 49.0 4.58e-01 100.0% 91.4%
3937334 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 48.0 3.69e-01 96.4% 45.1%
3313644 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.56 48.0 4.01e-01 100.0% 60.0%
3538411 213.1.1.11 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › NAT 0.56 40.0 2.93e-01 75.0% 28.4%
3573649 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.56 43.0 2.57e-01 91.1% 15.4%
5042740 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.56 45.0 3.70e-01 96.4% 76.3%
4394739 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.56 45.0 4.28e-01 98.2% 75.7%
3938332 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.55 47.0 3.11e-01 100.0% 47.8%
3929295 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 47.0 3.61e-01 96.4% 47.7%
3599577 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 44.0 2.75e-01 91.1% 21.9%
3691146 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.55 45.0 3.16e-01 98.2% 54.6%
3371527 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 47.0 3.66e-01 96.4% 57.3%
3909780 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.54 46.0 3.27e-01 98.2% 82.8%
3414351 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.54 47.0 3.31e-01 96.4% 71.4%
3614205 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 3.55e-01 100.0% 45.0%
4602686 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.54 46.0 3.13e-01 96.4% 26.0%
3619347 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 44.0 3.52e-01 96.4% 44.3%
3239000 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 45.0 3.55e-01 98.2% 73.8%
4041632 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.54 43.0 3.35e-01 94.6% 83.4%
3466381 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 46.0 3.73e-01 96.4% 62.7%
4981192 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 46.0 3.05e-01 100.0% 34.1%
3948814 4312.1.1.4 a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.53 41.0 3.56e-01 96.4% 50.5%
3977405 4312.1.1.4 a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.53 42.0 3.65e-01 96.4% 56.0%
5051418 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 43.0 3.44e-01 100.0% 71.1%
5056780 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 44.0 3.40e-01 96.4% 41.6%
3213868 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 45.0 3.41e-01 96.4% 50.4%
3389155 11.1.1.5 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Zona_pellucida 0.52 42.0 3.29e-01 94.6% 84.4%
3636379 220.1.1.203 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_23 0.52 44.0 3.30e-01 100.0% 52.9%
3987853 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 42.0 3.05e-01 89.3% 61.3%
5077287 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.52 41.0 2.66e-01 87.5% 90.1%
3390259 2485.1.1.55 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FAF1 0.51 40.0 3.05e-01 98.2% 71.8%
3388362 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 39.0 2.27e-01 89.3% 24.8%
3358578 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.50 39.0 3.61e-01 96.4% 74.1%