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OQ067476.1__WCD44088.1__Kuura_010__00010

Bact-Vir

OQ067476.1__WCD44088.1__Kuura_010__00010

Identity

Accession:
OQ067476 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Caulobacter_phage_Kuura

TaxID: 3017786

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 69-158
PDB
Domain cluster: rep: IMGVR_UViG_2811995091_000175-2811995091-2813113578__D944-996_1009-1024
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.78 56.0 6.17e-01 100.0% 94.4%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.77 54.0 5.50e-01 100.0% 73.3%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.76 55.0 5.44e-01 100.0% 72.0%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.72 59.0 6.03e-01 100.0% 89.7%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.72 65.0 6.48e-01 100.0% 93.6%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.71 58.0 6.22e-01 87.8% 100.0%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.70 65.0 6.31e-01 100.0% 95.9%
2ey4D00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.70 53.0 5.74e-01 100.0% 97.3%
8eq1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.70 61.0 6.20e-01 94.4% 100.0%
6su1D01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.69 61.0 6.11e-01 94.4% 100.0%
7r6yA01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.69 60.0 6.02e-01 94.4% 100.0%
3t05A02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.69 63.0 6.15e-01 100.0% 95.9%
1a3wB03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.67 62.0 6.07e-01 100.0% 93.8%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.66 51.0 4.81e-01 100.0% 67.9%
4ac9C04 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.65 48.0 5.07e-01 100.0% 88.7%
1vhkA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.64 47.0 5.17e-01 77.8% 95.9%
3okxB00 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.64 57.0 4.81e-01 98.9% 82.6%
3e1yE01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 53.0 5.47e-01 98.9% 96.5%
5trdA02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.63 56.0 4.96e-01 100.0% 94.8%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 51.0 5.06e-01 90.0% 83.7%
2fvgA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.63 49.0 5.24e-01 97.8% 100.0%
4x8iA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.61 52.0 5.38e-01 97.8% 100.0%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.60 45.0 4.28e-01 80.0% 68.8%
3mqgA02 2.20.70.110 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.60 28.0 3.93e-01 72.2% 100.0%
1z85A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.60 42.0 4.71e-01 91.1% 98.5%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 40.0 3.81e-01 84.4% 58.5%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 47.0 4.56e-01 90.0% 80.6%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.58 48.0 4.91e-01 98.9% 92.1%
1vwxf00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.58 52.0 4.88e-01 100.0% 91.7%
3im9A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.56 38.0 4.09e-01 82.2% 83.8%
1tulA00 2.70.40.20 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Baculovirus telokin-like protein 20 0.56 45.0 4.38e-01 98.9% 80.4%
3licA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 38.0 3.16e-01 72.2% 65.7%
2ra1A04 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 42.0 4.11e-01 96.7% 80.4%
4fxtA01 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.52 34.0 3.50e-01 91.1% 69.8%
3zxaC02 2.60.40.3420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 34.0 3.30e-01 94.4% 58.5%
4gaaA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.50 41.0 3.30e-01 93.3% 95.9%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5051090 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.79 59.0 6.20e-01 100.0% 87.5%
4949095 2004.1.1.10 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab 0.79 55.0 3.54e-01 98.9% 17.0%
4943228 1.1.7.146 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_Xtn 0.78 54.0 6.20e-01 97.8% 100.0%
3204011 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.78 56.0 5.67e-01 100.0% 75.6%
4204303 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.77 56.0 5.63e-01 100.0% 75.6%
3975132 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.77 55.0 5.59e-01 100.0% 75.6%
5015359 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.76 61.0 6.32e-01 98.9% 90.6%
4245518 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.75 55.0 5.97e-01 100.0% 93.3%
5057245 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.74 65.0 6.54e-01 100.0% 93.3%
None — 0.74 54.0 3.58e-01 96.7% 20.0%
4932128 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.74 64.0 6.62e-01 100.0% 98.8%
3944437 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 59.0 6.23e-01 100.0% 95.0%
4125814 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.74 54.0 5.85e-01 100.0% 93.3%
2161972 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 58.0 5.99e-01 100.0% 91.6%
4954732 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.72 64.0 6.47e-01 98.9% 95.6%
1516038 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.72 65.0 6.48e-01 100.0% 93.6%
4994399 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.72 67.0 6.61e-01 100.0% 95.8%
3829837 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.72 65.0 6.07e-01 97.8% 97.3%
4379635 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.72 67.0 6.56e-01 100.0% 95.8%
4104961 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.72 64.0 6.47e-01 97.8% 96.7%
3332717 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.72 66.0 6.22e-01 98.9% 88.6%
4311355 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.71 65.0 6.27e-01 98.9% 97.0%
3966502 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.71 65.0 6.32e-01 98.9% 92.0%
3310664 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.71 66.0 6.51e-01 100.0% 94.7%
4337888 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.71 66.0 6.35e-01 100.0% 92.0%
4984743 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.71 65.0 6.42e-01 98.9% 94.7%
4203356 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.70 65.0 6.38e-01 100.0% 96.8%
3987212 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.70 64.0 6.07e-01 100.0% 94.3%
3415703 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.70 64.0 6.36e-01 100.0% 97.9%
4972564 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.70 65.0 6.38e-01 100.0% 94.7%
4468653 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.70 64.0 6.34e-01 100.0% 95.8%
3177101 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.70 64.0 6.20e-01 100.0% 96.0%
3590326 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.70 64.0 6.05e-01 100.0% 97.1%
3481480 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.70 62.0 5.99e-01 96.7% 97.0%
4943168 1.1.7.144 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AAA_11 0.70 55.0 5.45e-01 96.7% 80.0%
4944119 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.70 63.0 6.26e-01 98.9% 94.7%
3322961 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.70 61.0 6.13e-01 94.4% 100.0%
3281973 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.69 64.0 6.29e-01 100.0% 95.8%
1515984 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.69 63.0 6.14e-01 100.0% 95.0%
5069810 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.69 51.0 5.34e-01 90.0% 86.3%
5050004 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.69 62.0 6.27e-01 97.8% 100.0%
4272870 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.69 63.0 6.18e-01 98.9% 95.8%
3386080 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.69 63.0 6.12e-01 100.0% 95.0%
4192745 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.69 63.0 6.22e-01 100.0% 96.8%
3261422 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.69 63.0 5.97e-01 100.0% 91.4%
3880866 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.69 63.0 5.96e-01 100.0% 92.4%
5041126 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.68 62.0 6.14e-01 100.0% 94.7%
3619933 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.66 51.0 5.17e-01 97.8% 83.3%
5010595 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 52.0 5.34e-01 98.9% 90.6%
4514735 1049.2.1.4 ↗ alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › Baseplate_J 0.66 49.0 3.86e-01 86.7% 37.4%
4457938 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.65 59.0 5.28e-01 100.0% 71.2%
3930882 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 58.0 5.71e-01 97.8% 93.7%
5000763 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 56.0 5.69e-01 100.0% 95.6%
5015718 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 49.0 5.07e-01 100.0% 86.7%
5051893 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.64 51.0 5.40e-01 98.9% 97.5%
4391995 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 52.0 5.39e-01 98.9% 94.1%
3599398 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.62 51.0 4.98e-01 90.0% 80.0%
4947671 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 51.0 5.36e-01 95.6% 100.0%
3698630 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.62 51.0 4.90e-01 90.0% 81.0%
4381495 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.62 52.0 5.21e-01 98.9% 91.1%
4682440 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.60 51.0 5.08e-01 100.0% 87.4%
4214180 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.60 50.0 4.99e-01 98.9% 86.3%
4666540 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.60 50.0 5.15e-01 98.9% 97.6%
3744357 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.60 44.0 4.56e-01 88.9% 83.5%
4452870 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.60 50.0 5.08e-01 98.9% 91.1%
3822850 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.59 49.0 4.73e-01 90.0% 83.0%
3272261 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.58 47.0 4.65e-01 97.8% 84.2%
3742942 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.58 51.0 4.95e-01 100.0% 98.0%
4098005 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.57 49.0 4.97e-01 100.0% 94.4%
5069785 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.57 44.0 3.92e-01 82.2% 78.4%
4185030 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.56 47.0 4.63e-01 98.9% 86.3%
4416787 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.56 46.0 4.70e-01 98.9% 91.1%
4004318 4182.1.1.3 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.56 41.0 3.79e-01 96.7% 59.2%
4063137 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.55 46.0 4.64e-01 100.0% 94.4%
4059476 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 4.03e-01 97.8% 68.3%
1944061 11.1.1.279 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TarS_C1 0.53 42.0 3.78e-01 92.2% 94.3%
5035640 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 4.04e-01 94.4% 77.1%
3396144 10.21.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 0.50 40.0 3.43e-01 87.8% 53.1%
None — 0.50 38.0 2.89e-01 80.0% 35.8%
D2 medium residues 30-64_169-253_367-404
PDB
Domain cluster: rep: MG209611.1__ATW59308.1__Cl131_gp040__00040__D34-63_88-152_273-297
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17236.9 best SU10_MCP 40.5 3.30e-10 63.9% 26.8%
D3 medium residues 254-366
PDB
Domain cluster: rep: IMGVR_UViG_3300025326_000356-3300025326-Ga0209342_100058551__D7-85_127-134