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OQ067476.1__WCD44095.1__Kuura_017__00017
Bact-VirOQ067476.1__WCD44095.1__Kuura_017__00017
Identity
- Accession:
- OQ067476 ↗
- Kingdom:
- phage
Quality
80.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 43-107
Domain cluster:
rep: AY328852.1__AAQ96491.1__X__00024__D88-161
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07484.18 best | Collar | 42.4 | 7.50e-11 | 83.1% | 79.0% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xgfA01 | 3.90.1340.10 | Alpha Beta › Alpha-Beta Complex › heat- and protease-stable fragment of the bacteriophage t4 short fibre, domain 3 › Phage tail collar domain | 0.88 | 63.0 | 6.73e-01 | 100.0% | 85.7% |
| 1ocyA01 | 3.90.1340.10 | Alpha Beta › Alpha-Beta Complex › heat- and protease-stable fragment of the bacteriophage t4 short fibre, domain 3 › Phage tail collar domain | 0.85 | 71.0 | 6.73e-01 | 100.0% | 76.3% |
| 2nrbA01 | 3.40.1080.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase | 0.62 | 49.0 | 3.38e-01 | 87.7% | 79.4% |
| 2f1fA02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.55 | 39.0 | 3.75e-01 | 76.9% | 66.7% |
| 3oc5A02 | 2.60.40.3240 | Mainly Beta › Sandwich › Immunoglobulin-like › Vibrio cholerae toxin co-regulated pilus biosynthesis protein F, C-terminal domain | 0.51 | 38.0 | 3.12e-01 | 86.2% | 85.1% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1839976 | 877.1.1.3 ↗ | a+b duplicates or obligate multimers › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › Collar,S_tail_recep_bd | 0.82 | 76.0 | 5.24e-01 | 100.0% | 90.9% |
| 3981712 | 877.1.1.2 ↗ | a+b duplicates or obligate multimers › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › Collar | 0.72 | 67.0 | 5.02e-01 | 100.0% | 98.6% |
| 141225 | 877.1.1.1 ↗ | a+b duplicates or obligate multimers › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › Phage_fiber,Collar | 0.71 | 66.0 | 4.45e-01 | 100.0% | 96.3% |
| 4532517 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.54 | 38.0 | 3.89e-01 | 98.5% | 80.0% |
| 3913489 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.51 | 37.0 | 3.20e-01 | 81.5% | 78.3% |
| 3964748 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.50 | 35.0 | 3.13e-01 | 76.9% | 78.1% |