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OQ067476.1__WCD44102.1__Kuura_024__00024

Bact-Vir

OQ067476.1__WCD44102.1__Kuura_024__00024

Identity

Accession:
OQ067476 ↗
Kingdom:
phage

Quality

66.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-53
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5cwkA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.92 76.0 5.03e-01 87.8% 25.6%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.89 76.0 5.67e-01 100.0% 40.7%
5cwhA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.86 65.0 4.48e-01 98.0% 25.6%
1xjaB00 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.85 68.0 4.77e-01 93.9% 28.6%
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.85 75.0 4.89e-01 100.0% 24.5%
1hqoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.85 75.0 5.45e-01 100.0% 38.2%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.84 73.0 5.95e-01 98.0% 78.0%
7d3uC01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.84 75.0 5.74e-01 100.0% 60.7%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.83 73.0 6.68e-01 100.0% 83.1%
1fioA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.82 67.0 4.46e-01 89.8% 42.1%
2oh3A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.82 69.0 4.93e-01 95.9% 39.6%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.81 65.0 6.56e-01 89.8% 100.0%
2rklF00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.80 60.0 5.91e-01 87.8% 76.9%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.79 68.0 5.11e-01 100.0% 49.2%
2kp8A00 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.79 63.0 5.52e-01 87.8% 88.9%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 68.0 6.05e-01 100.0% 74.6%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 66.0 5.32e-01 100.0% 49.5%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.78 60.0 4.78e-01 85.7% 43.2%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.77 68.0 5.92e-01 100.0% 68.0%
3fseB02 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.77 68.0 4.82e-01 100.0% 34.0%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 67.0 6.05e-01 100.0% 87.0%
2l1lB00 1.20.1440.250 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.76 62.0 4.59e-01 93.9% 35.4%
2h1jA00 1.10.1370.30 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.75 64.0 3.62e-01 100.0% 9.0%
3fxdC00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.75 60.0 6.03e-01 91.8% 90.0%
1st6A04 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.75 64.0 4.92e-01 100.0% 48.7%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.74 62.0 5.02e-01 98.0% 63.9%
1b3qA01 1.10.287.560 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain 0.73 60.0 5.63e-01 95.9% 75.8%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.72 59.0 4.99e-01 100.0% 53.9%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.72 63.0 5.39e-01 100.0% 71.8%
2lpeA01 6.10.140.1120 Special › Helix non-globular › Helix Hairpins › 0.72 62.0 5.39e-01 100.0% 70.5%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.71 56.0 4.89e-01 100.0% 56.1%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.71 61.0 4.40e-01 100.0% 36.1%
4od8D00 6.10.140.1880 Special › Helix non-globular › Helix Hairpins › 0.71 53.0 5.27e-01 83.7% 86.3%
1otkA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.70 60.0 3.85e-01 100.0% 44.7%
4htpB00 1.10.3260.10 Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain 0.70 56.0 3.62e-01 89.8% 73.9%
2ii2A04 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.70 48.0 4.25e-01 75.5% 48.1%
3m1cB01 3.30.390.170 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.70 50.0 3.97e-01 85.7% 35.8%
1wpbG01 1.10.287.680 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.69 50.0 4.90e-01 83.7% 72.2%
1wfdA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.69 56.0 4.75e-01 100.0% 54.8%
1kfdA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.69 57.0 5.19e-01 100.0% 70.4%
7ztbB01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.67 51.0 3.63e-01 89.8% 26.4%
1vw4L01 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.66 50.0 3.77e-01 89.8% 31.9%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 53.0 4.60e-01 95.9% 61.4%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.65 52.0 4.87e-01 89.8% 88.5%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 49.0 3.76e-01 89.8% 86.4%
3h6pC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.65 55.0 5.28e-01 95.9% 98.2%
1zeeA01 1.20.58.600 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 52.0 4.14e-01 100.0% 52.5%
4hkaA02 1.10.287.3810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 48.0 4.83e-01 87.8% 84.3%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.63 55.0 4.47e-01 98.0% 70.3%
1tmxB00 2.60.130.10 Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase 0.63 49.0 3.04e-01 87.8% 14.6%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.61 47.0 4.36e-01 100.0% 64.0%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4776699 3282.1.1.1 a+b complex topology › LidA › LidA › LidA › LidA_Long_CC 0.90 82.0 5.32e-01 100.0% 25.5%
3738329 109.4.1.554 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Neurochondrin 0.90 70.0 3.93e-01 83.7% 8.2%
3180119 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.89 80.0 6.58e-01 100.0% 57.6%
4652719 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.87 77.0 6.18e-01 100.0% 66.3%
3927738 632.8.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 0.87 77.0 6.14e-01 100.0% 69.5%
4129922 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.87 77.0 6.07e-01 100.0% 49.0%
3170639 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.86 78.0 6.40e-01 100.0% 60.0%
3284609 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.86 76.0 6.34e-01 100.0% 57.6%
4957831 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.86 77.0 5.23e-01 100.0% 30.3%
3259417 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.85 76.0 4.97e-01 100.0% 24.5%
4980470 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.85 74.0 5.98e-01 100.0% 51.6%
4015874 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.85 76.0 5.11e-01 100.0% 32.0%
3163896 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.85 76.0 4.89e-01 100.0% 23.3%
3663959 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.84 75.0 5.48e-01 100.0% 37.7%
4034260 605.1.1.12 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF4870 0.84 72.0 5.40e-01 100.0% 40.0%
3167298 3711.1.1.0 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.83 74.0 5.75e-01 100.0% 46.7%
5057549 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 74.0 5.54e-01 100.0% 41.5%
3934599 603.2.1.0 alpha bundles › STAT-like › STAT › STAT 0.83 72.0 5.63e-01 100.0% 46.7%
3855328 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.82 71.0 5.69e-01 100.0% 50.5%
3757869 4006.1.1.0 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain 0.81 70.0 5.65e-01 100.0% 50.5%
4579811 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.81 71.0 5.55e-01 100.0% 46.7%
3704748 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.80 69.0 6.06e-01 100.0% 65.3%
4596937 605.1.1.247 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PCRF 0.80 70.0 5.54e-01 100.0% 49.0%
3906133 633.21.1.4 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › Cg6151-P 0.80 70.0 5.29e-01 98.0% 41.7%
4147979 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.79 70.0 5.54e-01 100.0% 50.0%
4136151 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.79 69.0 5.48e-01 100.0% 50.0%
3955621 603.5.1.33 alpha bundles › STAT-like › FlgN-like › FlgN-like › SLAC1 0.79 67.0 4.79e-01 100.0% 36.8%
3688828 604.10.1.0 alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac 0.79 64.0 5.75e-01 91.8% 65.7%
4941665 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.79 67.0 6.10e-01 100.0% 71.0%
5027312 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.79 68.0 5.38e-01 100.0% 48.5%
3738598 192.6.1.2 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATPD_C_fung 0.78 58.0 6.10e-01 81.6% 100.0%
57654 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.78 70.0 6.78e-01 100.0% 100.0%
4939264 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.77 64.0 5.81e-01 100.0% 68.6%
3697927 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.77 65.0 4.19e-01 95.9% 20.4%
3173378 109.4.1.338 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIC1 0.77 64.0 4.09e-01 98.0% 19.6%
4319295 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.76 64.0 5.12e-01 100.0% 47.6%
4887352 4246.1.1.4 a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_2, RNA_pol_Rpb1_1 0.75 59.0 3.59e-01 93.9% 13.2%
3503536 3711.1.1.38 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › Patched 0.74 61.0 5.16e-01 100.0% 53.3%
4803705 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.73 60.0 5.62e-01 100.0% 81.8%
3266269 109.4.1.70 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.73 61.0 4.05e-01 100.0% 23.4%
3927675 2004.1.1.600 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn, AAA_21 0.72 65.0 3.61e-01 100.0% 19.5%
4826095 5067.1.1.5 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Sterol-sensing 0.71 59.0 4.96e-01 100.0% 52.7%
3603633 3997.1.1.1 alpha arrays › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › CobN-Mg_chel 0.67 50.0 3.44e-01 83.7% 21.6%
D2 medium residues 74-181
PDB