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OQ067477.1__WCD44217.1__Lumi_078__00078
Bact-VirOQ067477.1__WCD44217.1__Lumi_078__00078
Identity
- Accession:
- OQ067477 ↗
- Kingdom:
- phage
Quality
72.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-61
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2n1rA00 | 1.10.150.90 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 | 0.62 | 52.0 | 4.06e-01 | 100.0% | 61.2% |
| 4uw9A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 36.0 | 3.34e-01 | 80.4% | 95.2% |
| 3rjtA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.51 | 42.0 | 2.94e-01 | 98.2% | 69.6% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4999332 | 3930.1.1.3 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical | 0.64 | 48.0 | 3.59e-01 | 82.1% | 77.2% |
| 4044410 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.58 | 49.0 | 4.00e-01 | 100.0% | 62.6% |
| 4013760 | 4015.1.1.1 ↗ | alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 | 0.57 | 44.0 | 2.94e-01 | 96.4% | 19.6% |
| 3715968 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.55 | 47.0 | 4.19e-01 | 96.4% | 67.5% |
| 4200092 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.53 | 45.0 | 3.69e-01 | 100.0% | 53.6% |
| 3688112 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 38.0 | 2.76e-01 | 89.3% | 38.5% |
| 3963704 | 109.4.1.206 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › YfiO | 0.50 | 41.0 | 3.10e-01 | 96.4% | 41.9% |