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OQ067478.1__WCD44311.1__Tiera_055__00054

Bact-Vir

OQ067478.1__WCD44311.1__Tiera_055__00054

Identity

Accession:
OQ067478 ↗
Kingdom:
phage

Quality

83.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 131-218
PDB
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5t3wA00 1.20.120.1160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.69 52.0 4.44e-01 78.4% 54.7%
4uiqB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.69 60.0 5.07e-01 98.9% 89.5%
3gyuA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.69 49.0 3.61e-01 75.0% 61.6%
1f5oA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.67 58.0 4.89e-01 96.6% 91.3%
1tu9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.67 59.0 5.22e-01 100.0% 100.0%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 44.0 5.00e-01 84.1% 95.2%
2gomA00 1.10.10.1270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV 0.65 40.0 4.61e-01 86.4% 88.5%
2qgmA03 1.20.1440.30 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain 0.65 56.0 5.11e-01 94.3% 75.9%
5hyhA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.64 51.0 3.58e-01 86.4% 77.4%
4c91A03 1.20.58.2150 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 54.0 4.26e-01 90.9% 52.0%
4iuwA02 1.10.1380.10 Mainly Alpha › Orthogonal Bundle › Neutral endopeptidase; domain 2 › Neutral endopeptidase , domain2 0.63 47.0 3.21e-01 79.5% 42.8%
3zheA02 1.25.40.760 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 44.0 3.38e-01 72.7% 42.0%
4hfkB00 1.20.120.1620 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 36.0 3.54e-01 78.4% 52.0%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 52.0 4.57e-01 100.0% 97.9%
6tblB01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 45.0 4.20e-01 78.4% 84.7%
3f7cA00 1.20.1590.10 Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like 0.60 50.0 3.91e-01 96.6% 41.7%
1zs3A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 48.0 3.88e-01 87.5% 81.9%
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 48.0 4.17e-01 87.5% 96.4%
2clbA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.59 47.0 3.84e-01 85.2% 88.1%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.58 49.0 4.65e-01 93.2% 88.7%
4lixA03 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.57 50.0 3.68e-01 96.6% 44.1%
4nwpD00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.57 48.0 4.08e-01 93.2% 82.6%
2yw6B00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.57 47.0 3.96e-01 90.9% 92.7%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.57 46.0 4.79e-01 96.6% 95.2%
2c0gA02 1.20.1150.12 Mainly Alpha › Up-down Bundle › Endoplasmic reticulum protein erp29 › Endoplasmic reticulum resident protein 29, C-terminal domain 0.57 50.0 4.74e-01 97.7% 99.1%
4flbA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 44.0 3.93e-01 85.2% 67.9%
1zvzA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.57 45.0 4.06e-01 87.5% 66.1%
4l7mA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.56 46.0 3.25e-01 87.5% 50.2%
4akgA04 1.20.58.1120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 0.56 47.0 3.92e-01 93.2% 65.4%
4cybD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.56 49.0 3.92e-01 96.6% 88.3%
1ugoA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.55 49.0 4.73e-01 98.9% 92.9%
2lseA00 1.20.120.1360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 44.0 4.21e-01 85.2% 84.2%
6jpaE00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.55 47.0 3.81e-01 94.3% 76.9%
2jbwA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.55 41.0 3.97e-01 85.2% 68.9%
5hayA02 1.25.40.440 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain 0.55 39.0 4.13e-01 76.1% 87.3%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.55 47.0 3.13e-01 100.0% 71.3%
1bgcA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.55 48.0 4.01e-01 100.0% 77.2%
4nswB01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.54 38.0 2.77e-01 72.7% 66.0%
3nvoB02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.54 47.0 4.31e-01 96.6% 88.8%
2p61A00 1.20.120.490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain 0.54 41.0 3.81e-01 81.8% 73.7%
5u9nB00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.54 46.0 4.19e-01 95.5% 84.2%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.53 46.0 4.67e-01 95.5% 97.7%
4qndA00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.53 43.0 4.25e-01 96.6% 82.5%
3e0sA00 1.40.20.10 Mainly Alpha › Alpha solenoid › CHAD domain › CHAD domain 0.53 41.0 2.93e-01 86.4% 36.5%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 39.0 2.84e-01 77.3% 77.5%
4h3tA02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.53 47.0 4.06e-01 100.0% 68.8%
2c42A06 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.52 44.0 2.90e-01 94.3% 43.1%
5m72A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 38.0 3.24e-01 79.5% 52.0%
3on3B00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.51 41.0 3.48e-01 95.5% 94.9%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.51 42.0 3.44e-01 94.3% 95.5%
1w53A00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.50 37.0 3.81e-01 84.1% 83.3%
2ovjA00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.50 43.0 3.33e-01 95.5% 65.2%
6ks6q01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.50 43.0 3.13e-01 100.0% 78.8%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3692700 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 53.0 3.41e-01 78.4% 40.7%
4630964 610.1.1.1 alpha arrays › ERP29 C domain-like › ERP29 C domain-like › ERP29 C domain-like › ERp29 0.70 47.0 5.03e-01 94.3% 80.0%
3262256 610.1.1.1 alpha arrays › ERP29 C domain-like › ERP29 C domain-like › ERP29 C domain-like › ERp29 0.69 46.0 4.49e-01 93.2% 62.1%
3733091 109.58.1.1 alpha superhelices › Repetitive alpha hairpins › DNA repair protein Rev1 C-terminal domain › DNA repair protein Rev1 C-terminal domain › REV1_C 0.69 49.0 4.56e-01 73.9% 80.9%
3453478 610.1.1.1 alpha arrays › ERP29 C domain-like › ERP29 C domain-like › ERP29 C domain-like › ERp29 0.69 48.0 4.52e-01 97.7% 60.0%
3578718 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.68 51.0 5.01e-01 79.5% 89.5%
9795 4244.1.1.2 a/b three-layered sandwiches › EreA/ChaN-like › EreA/ChaN-like › EreA/ChaN-like › Erythro_esteras 0.67 59.0 3.82e-01 96.6% 39.3%
3499296 133.1.1.1 alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.65 51.0 4.12e-01 85.2% 100.0%
3307044 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.62 55.0 5.21e-01 96.6% 84.8%
3935032 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.62 48.0 4.52e-01 81.8% 94.3%
3719682 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.60 47.0 4.30e-01 85.2% 94.2%
3458511 371.1.1.7 few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › zf-RVT 0.60 43.0 3.58e-01 77.3% 53.3%
3612308 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.59 53.0 4.88e-01 98.9% 91.2%
3580280 604.1.1.192 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF26998 0.59 50.0 4.88e-01 92.0% 94.7%
4982605 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.59 50.0 4.52e-01 94.3% 87.0%
3940793 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.59 45.0 4.18e-01 83.0% 87.8%
3904075 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.59 49.0 4.58e-01 90.9% 89.1%
3941250 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.59 47.0 4.44e-01 88.6% 92.7%
3968401 109.4.1.86 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF924 0.58 52.0 4.03e-01 98.9% 79.5%
3477346 109.4.1.553 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N,Xpo1 0.58 46.0 2.94e-01 86.4% 26.6%
3580282 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 48.0 4.33e-01 90.9% 77.5%
3602825 633.12.1.0 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.57 46.0 4.18e-01 96.6% 62.3%
1693762 633.6.1.1 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 0.57 47.0 3.96e-01 90.9% 80.8%
3796461 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.56 43.0 4.57e-01 87.5% 97.3%
1676534 633.26.1.1 alpha bundles › Bromodomain-like › SidC lipid-binding domain › SidC lipid-binding domain › SidC_lipid-bd 0.56 47.0 4.20e-01 95.5% 81.8%
3213348 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.56 47.0 4.13e-01 95.5% 91.9%
3991109 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.55 46.0 4.02e-01 93.2% 90.0%
3940794 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 45.0 4.06e-01 88.6% 78.3%
3812952 633.26.1.0 alpha bundles › Bromodomain-like › SidC lipid-binding domain › SidC lipid-binding domain 0.55 45.0 3.59e-01 93.2% 62.1%
3511947 2004.1.1.221 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › P-loop_TraG 0.55 48.0 3.08e-01 96.6% 48.7%
3171976 109.4.1.120 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Kinetochor_Ybp2 0.55 46.0 2.83e-01 94.3% 37.2%
3406412 109.4.1.1730 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, Xpo1, TPR_TNPO3_IPO13_2nd, TPR_TNPO3_IPO13_4th 0.54 47.0 2.75e-01 95.5% 93.9%
3619883 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.54 45.0 3.93e-01 95.5% 85.0%
3495915 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 42.0 3.08e-01 86.4% 36.2%
5025722 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 46.0 4.15e-01 92.0% 93.3%
2055366 622.1.1.2 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HsbA 0.54 45.0 4.65e-01 93.2% 100.0%
4227021 5045.1.1.1 alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A 0.52 46.0 3.44e-01 100.0% 49.8%
3497911 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 43.0 3.87e-01 97.7% 88.9%
3431415 6155.1.1.6 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF2921 0.52 41.0 4.20e-01 92.0% 91.8%
3731974 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.51 36.0 3.39e-01 72.7% 93.6%
D2 medium residues 49-129
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zuvA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 39.0 2.61e-01 85.2% 18.8%
1w7oA00 3.90.10.10 Alpha Beta › Alpha-Beta Complex › Cytochrome C3 › Cytochrome C3 0.52 39.0 3.48e-01 81.5% 88.1%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3309680 170.1.1.26 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › DUF7746 0.60 32.0 2.85e-01 82.7% 38.2%
3781059 108.1.1.26 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.59 44.0 4.03e-01 80.2% 77.3%
3575885 108.1.1.28 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.56 43.0 4.09e-01 81.5% 86.3%
3608050 2.9.1.1 beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.55 49.0 3.06e-01 100.0% 76.2%
4003491 5073.1.1.0 alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M 0.54 43.0 2.86e-01 87.7% 81.6%
3832703 2004.1.1.363 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C 0.52 43.0 2.52e-01 91.4% 11.3%
3827247 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.51 40.0 2.78e-01 86.4% 27.8%
4308397 1074.1.1.4 alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_2_N 0.51 36.0 2.88e-01 72.8% 90.3%
3538351 109.54.1.0 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.51 35.0 2.55e-01 71.6% 35.8%
3949644 3352.1.1.15 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › GT87 0.50 44.0 2.78e-01 98.8% 74.8%