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OQ076693.1__WBM23587.1__X__00173
Bact-VirOQ076693.1__WBM23587.1__X__00173
Identity
- Accession:
- OQ076693 ↗
- Kingdom:
- phage
Quality
93.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Mosigvirus›
Escherichia_phage_PNJ-6
TaxID: 3017168
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-60
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zhxA02 | 1.10.287.2720 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 41.0 | 3.76e-01 | 86.2% | 64.4% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3949156 | 2500.1.1.7 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Gly_radical, NRDD | 0.96 | 91.0 | 5.05e-01 | 100.0% | 9.8% |
| 3978395 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.96 | 91.0 | 5.04e-01 | 100.0% | 9.7% |
D2
high
residues 77-179
Domain cluster:
rep: NC_049856.1__YP_009905396.1__H1Z35_gp180__00071__D225-318
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13597.12 best | NRDD | 73.7 | 2.00e-20 | 100.0% | 14.5% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b8bA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.99 | 97.0 | 5.82e-01 | 100.0% | 19.3% |
| 2oerA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.64 | 58.0 | 4.82e-01 | 100.0% | 73.2% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.63 | 41.0 | 3.89e-01 | 75.7% | 55.4% |
| 1lrzA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 35.0 | 3.15e-01 | 100.0% | 43.4% |
| 1yjgA00 | 1.20.120.240 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6 | 0.56 | 40.0 | 3.52e-01 | 74.8% | 65.6% |
| 3anwA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 37.0 | 3.59e-01 | 89.3% | 61.1% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.55 | 33.0 | 3.68e-01 | 71.8% | 78.7% |
| 3uumA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 40.0 | 3.77e-01 | 75.7% | 74.6% |
| 1j1jA01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.54 | 49.0 | 4.51e-01 | 100.0% | 89.4% |
| 6ko8A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 39.0 | 3.22e-01 | 77.7% | 53.5% |
| 3rc3A05 | 1.20.58.1080 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 37.0 | 3.62e-01 | 75.7% | 68.1% |
| 3tdvA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.51 | 40.0 | 3.24e-01 | 85.4% | 56.8% |
| 4rngC00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.50 | 32.0 | 3.50e-01 | 74.8% | 78.3% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3949156 | 2500.1.1.7 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Gly_radical, NRDD | 0.99 | 97.0 | 5.73e-01 | 100.0% | 16.9% |
| 3978395 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.99 | 97.0 | 5.71e-01 | 100.0% | 16.9% |
| 4895340 | 2500.1.1.7 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Gly_radical, NRDD | 0.98 | 95.0 | 5.78e-01 | 100.0% | 20.2% |
| 4895332 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.97 | 94.0 | 5.75e-01 | 100.0% | 20.4% |
| 3100301 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.94 | 90.0 | 5.32e-01 | 100.0% | 19.7% |
| 5001541 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.93 | 71.0 | 4.25e-01 | 100.0% | 13.3% |
| 5031462 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.87 | 71.0 | 4.42e-01 | 100.0% | 17.3% |
| 1347962 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.87 | 74.0 | 4.99e-01 | 100.0% | 27.7% |
| 4982642 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.87 | 69.0 | 4.17e-01 | 100.0% | 15.1% |
| 5031517 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.86 | 69.0 | 4.14e-01 | 100.0% | 15.0% |
| 5004456 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.84 | 67.0 | 3.95e-01 | 100.0% | 13.0% |
| 3603295 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.84 | 66.0 | 4.03e-01 | 100.0% | 15.0% |
| 4976938 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.84 | 66.0 | 3.95e-01 | 100.0% | 13.6% |
| 5053026 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.83 | 66.0 | 4.07e-01 | 100.0% | 16.5% |
| 4954935 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.83 | 69.0 | 4.15e-01 | 100.0% | 14.4% |
| 4974476 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.80 | 65.0 | 3.88e-01 | 100.0% | 13.6% |
| 3679438 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.73 | 43.0 | 4.62e-01 | 74.8% | 66.7% |
| 3281786 | 371.1.1.0 ↗ | few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 | 0.68 | 60.0 | 5.50e-01 | 98.1% | 99.3% |
| 3973819 | 191.1.1.21 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_18 | 0.64 | 54.0 | 4.79e-01 | 91.3% | 71.0% |
| 3606094 | 109.7.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E | 0.60 | 41.0 | 4.45e-01 | 87.4% | 84.7% |
| 3361553 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.60 | 36.0 | 3.96e-01 | 71.8% | 71.8% |
| 3974187 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.59 | 38.0 | 4.06e-01 | 96.1% | 74.4% |
| 3580795 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.59 | 38.0 | 3.29e-01 | 75.7% | 41.2% |
| 3967978 | 191.1.1.49 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_13_2 | 0.58 | 42.0 | 4.16e-01 | 74.8% | 72.7% |
| 5013157 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.57 | 38.0 | 3.52e-01 | 89.3% | 53.1% |
| 3555108 | 109.4.1.235 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP68 | 0.55 | 45.0 | 2.92e-01 | 88.3% | 40.0% |
| 4934707 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.54 | 38.0 | 3.10e-01 | 94.2% | 36.2% |
| 3955928 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.53 | 43.0 | 3.16e-01 | 87.4% | 54.7% |
| 3973803 | 109.3.1.18 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DUF2157 | 0.53 | 45.0 | 3.52e-01 | 100.0% | 47.5% |
| 4970403 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.53 | 36.0 | 3.31e-01 | 75.7% | 53.3% |
| 3179894 | 3615.1.1.0 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain | 0.53 | 38.0 | 3.45e-01 | 75.7% | 60.7% |
| 1229147 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.53 | 39.0 | 2.87e-01 | 79.6% | 59.9% |
| 5024994 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.50 | 35.0 | 3.35e-01 | 75.7% | 61.7% |
| 3839735 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.50 | 41.0 | 3.21e-01 | 89.3% | 73.5% |