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OQ076693.1__WBM23650.1__X__00236
Bact-VirOQ076693.1__WBM23650.1__X__00236
Identity
- Accession:
- OQ076693 ↗
- Kingdom:
- phage
Quality
62.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Mosigvirus›
Escherichia_phage_PNJ-6
TaxID: 3017168
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-72
Domain cluster:
rep: MN044033.1__QDB71792.1__CPT_Marfa_137__00137__D15-67
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vtnC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 53.0 | 4.71e-01 | 81.2% | 59.8% |
| 2g9wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 45.0 | 4.64e-01 | 75.4% | 70.1% |
| 3elkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 48.0 | 4.25e-01 | 88.4% | 50.5% |
| 1gzsB00 | 1.10.4120.10 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain | 0.67 | 50.0 | 3.82e-01 | 81.2% | 79.4% |
| 2ly1A03 | 3.30.420.610 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like | 0.66 | 46.0 | 4.40e-01 | 76.8% | 63.0% |
| 4etsA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 45.0 | 4.26e-01 | 88.4% | 59.8% |
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.64 | 47.0 | 4.33e-01 | 78.3% | 60.7% |
| 2dqlA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 46.0 | 3.95e-01 | 85.5% | 51.3% |
| 2cqnA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.59 | 46.0 | 4.50e-01 | 88.4% | 76.6% |
| 2ggfA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.58 | 38.0 | 3.13e-01 | 79.7% | 34.3% |
| 3s93A00 | 3.30.420.610 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like | 0.58 | 48.0 | 4.60e-01 | 92.8% | 82.5% |
| 1e6vA02 | 3.30.70.470 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 44.0 | 3.30e-01 | 84.1% | 82.3% |
| 2db7A01 | 6.10.250.980 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.57 | 33.0 | 3.68e-01 | 71.0% | 75.5% |
| 1u84A00 | 1.10.340.20 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain | 0.56 | 41.0 | 3.92e-01 | 79.7% | 72.8% |
| 1iufA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.56 | 41.0 | 4.01e-01 | 81.2% | 75.3% |
| 7dkaA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 40.0 | 2.96e-01 | 78.3% | 31.3% |
| 2ds2D01 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.55 | 39.0 | 4.14e-01 | 76.8% | 100.0% |
| 2hzdA00 | 6.10.20.40 | Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain | 0.55 | 45.0 | 4.38e-01 | 98.6% | 89.0% |
| 6a7hA01 | 1.20.140.180 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.54 | 40.0 | 3.26e-01 | 78.3% | 73.5% |
| 2m3aA00 | 1.10.10.1900 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Knl-2 Myb-like DNA-binding domain-like | 0.54 | 44.0 | 4.47e-01 | 94.2% | 95.5% |
| 2mgqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.54 | 40.0 | 4.08e-01 | 89.9% | 83.8% |
| 1a59A02 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.54 | 38.0 | 3.35e-01 | 76.8% | 100.0% |
| 1t9kA01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.53 | 40.0 | 3.36e-01 | 85.5% | 42.9% |
| 1r4vA00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.53 | 42.0 | 3.36e-01 | 89.9% | 72.8% |
| 1dxrL02 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.53 | 36.0 | 3.19e-01 | 71.0% | 45.4% |
| 2guzA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.53 | 40.0 | 3.99e-01 | 81.2% | 91.5% |
| 1z21A00 | 1.10.10.1000 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Type III secretion system virulence factor YopR, core domain | 0.53 | 43.0 | 3.94e-01 | 94.2% | 72.9% |
| 4uurA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 42.0 | 3.56e-01 | 91.3% | 96.0% |
| 2c0kB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 43.0 | 3.48e-01 | 95.7% | 96.0% |
| 2pm6A00 | 1.25.40.1030 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 46.0 | 2.96e-01 | 100.0% | 73.0% |
| 2pjqA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.52 | 38.0 | 3.58e-01 | 81.2% | 100.0% |
| 4houB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 43.0 | 2.99e-01 | 95.7% | 57.0% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3340029 | 101.1.1.176 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DEK_C | 0.78 | 58.0 | 5.71e-01 | 79.7% | 76.0% |
| 3357591 | 101.1.1.176 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DEK_C | 0.77 | 57.0 | 5.56e-01 | 78.3% | 73.3% |
| 3352882 | 101.7.1.1 ↗ | alpha arrays › HTH › DEK-C › DEK-C › DEK_C | 0.76 | 59.0 | 5.93e-01 | 84.1% | 82.9% |
| 3964745 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 49.0 | 4.67e-01 | 72.5% | 57.5% |
| 3885941 | 101.1.1.132 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SENP3_5_N | 0.68 | 53.0 | 5.30e-01 | 85.5% | 92.9% |
| 5028531 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 46.0 | 4.25e-01 | 78.3% | 55.6% |
| 4009630 | 162.1.1.5 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PF30457 | 0.64 | 47.0 | 4.15e-01 | 78.3% | 95.0% |
| 4014609 | 101.1.1.79 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N | 0.62 | 46.0 | 4.69e-01 | 82.6% | 86.2% |
| 3708338 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 48.0 | 5.05e-01 | 89.9% | 98.3% |
| 3738343 | 101.1.1.79 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N | 0.60 | 43.0 | 4.52e-01 | 82.6% | 90.0% |
| 4274627 | 101.1.1.266 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut | 0.60 | 42.0 | 4.48e-01 | 89.9% | 85.0% |
| 3173405 | 592.6.1.0 ↗ | alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain | 0.59 | 47.0 | 4.74e-01 | 91.3% | 88.6% |
| 5030693 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 46.0 | 4.09e-01 | 88.4% | 60.0% |
| 3602364 | 101.1.15.0 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain | 0.57 | 43.0 | 4.03e-01 | 88.4% | 64.4% |
| 2505 | 101.1.1.79 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N | 0.56 | 41.0 | 3.99e-01 | 81.2% | 74.4% |
| 4481481 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.55 | 37.0 | 2.85e-01 | 71.0% | 92.0% |
| 4288099 | 106.1.1.3 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Bac_globin | 0.55 | 45.0 | 3.77e-01 | 94.2% | 92.2% |
| 3809667 | 109.4.1.1256 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 | 0.54 | 41.0 | 2.59e-01 | 82.6% | 23.1% |
| 4956782 | 3290.1.1.1 ↗ | alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › FeoB_Cyto | 0.53 | 33.0 | 3.21e-01 | 88.4% | 55.0% |
| None | — | 0.52 | 36.0 | 2.75e-01 | 75.4% | 87.8% | |
| 3464623 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.51 | 42.0 | 3.01e-01 | 94.2% | 65.9% |