←Back to structures
OQ076693.1__WBM23687.1__X__00273
Bact-VirOQ076693.1__WBM23687.1__X__00273
Identity
- Accession:
- OQ076693 ↗
- Kingdom:
- phage
Quality
90.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Mosigvirus›
Escherichia_phage_PNJ-6
TaxID: 3017168
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-80
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25623.2 best | T4_CASP | 70.0 | 3.30e-19 | 82.5% | 25.9% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6grjB01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.78 | 60.0 | 3.91e-01 | 80.0% | 22.8% |
| 4mk6A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.72 | 52.0 | 3.91e-01 | 76.2% | 72.3% |
| 3q5dA02 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.70 | 46.0 | 4.35e-01 | 81.2% | 55.7% |
| 3zheC01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.68 | 34.0 | 2.57e-01 | 81.2% | 20.7% |
| 3r84B00 | 6.10.280.160 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 | 0.68 | 53.0 | 5.34e-01 | 100.0% | 83.7% |
| 2xzeB00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.66 | 56.0 | 4.68e-01 | 93.8% | 94.2% |
| 2iu5B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.65 | 47.0 | 3.58e-01 | 75.0% | 76.3% |
| 4ymuD00 | 1.10.3720.10 | Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like | 0.65 | 51.0 | 3.72e-01 | 85.0% | 31.6% |
| 1sqgA01 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.63 | 32.0 | 2.68e-01 | 78.8% | 27.0% |
| 6nyyE01 | 1.20.58.760 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Peptidase M41 | 0.58 | 48.0 | 3.66e-01 | 88.7% | 79.2% |
| 1ux5A03 | 1.20.58.2220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain | 0.54 | 50.0 | 3.50e-01 | 100.0% | 82.4% |
| 2jpcA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 27.0 | 3.06e-01 | 75.0% | 65.6% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3212246 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.81 | 67.0 | 5.09e-01 | 87.5% | 90.3% |
| 3397013 | 148.1.3.60 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF4818 | 0.78 | 69.0 | 5.63e-01 | 97.5% | 82.1% |
| 4128678 | 148.1.3.329 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Adhesin_P1_N | 0.74 | 62.0 | 5.26e-01 | 97.5% | 56.8% |
| 1447952 | 3908.1.1.1 ↗ | extended segments › Adhesin P1 N-terminal domain › Adhesin P1 N-terminal domain › Adhesin P1 N-terminal domain › Adhesin_P1_N | 0.74 | 62.0 | 5.32e-01 | 88.7% | 62.0% |
| 3962942 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.72 | 64.0 | 5.01e-01 | 93.8% | 49.3% |
| 3610983 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.69 | 53.0 | 3.51e-01 | 80.0% | 69.8% |
| 3579249 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 46.0 | 4.53e-01 | 73.8% | 74.1% |
| 3945035 | 6027.1.1.2 ↗ | alpha arrays › Host-nuclease inhibitor protein Gam › Host-nuclease inhibitor protein Gam › Host-nuclease inhibitor protein Gam › PF28165 | 0.63 | 46.0 | 4.45e-01 | 77.5% | 78.9% |
| 3442316 | 3922.1.1.258 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Nnf1 | 0.63 | 51.0 | 4.22e-01 | 86.3% | 54.1% |
| 3308720 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.63 | 50.0 | 5.29e-01 | 83.7% | 100.0% |
| 4943642 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.62 | 52.0 | 4.48e-01 | 88.7% | 61.7% |
| 3449133 | 3100.1.1.0 ↗ | extended segments › Synaptobrevin › Synaptobrevin › Synaptobrevin | 0.60 | 44.0 | 3.22e-01 | 75.0% | 50.2% |
| 4024003 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.60 | 53.0 | 4.21e-01 | 92.5% | 74.5% |
| 3584822 | 3291.1.1.147 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › MT | 0.59 | 47.0 | 4.08e-01 | 85.0% | 76.7% |
| 3992404 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.53 | 45.0 | 4.41e-01 | 88.7% | 91.8% |
| 3979666 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.50 | 29.0 | 3.24e-01 | 92.5% | 75.0% |
D2
medium
residues 81-132
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25623.2 best | T4_CASP | 85.5 | 6.30e-24 | 100.0% | 21.1% |