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OQ079154.1__WCD55632.1__BAYBAE_52__00052

Bact-Vir

OQ079154.1__WCD55632.1__BAYBAE_52__00052

Identity

Accession:
OQ079154 ↗
Kingdom:
phage

Quality

77.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_Baybae

TaxID: 3017794

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 17-92
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09926.16 best DUF2158 45.8 5.90e-12 61.8% 90.4%
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.85 61.0 5.57e-01 73.7% 72.6%
1v29B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.84 61.0 5.55e-01 75.0% 94.8%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 57.0 6.50e-01 71.1% 100.0%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 58.0 6.53e-01 75.0% 100.0%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.80 59.0 5.95e-01 77.6% 79.2%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 56.0 6.08e-01 73.7% 96.8%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 55.0 5.73e-01 73.7% 97.2%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.77 54.0 4.69e-01 72.4% 60.6%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 53.0 5.74e-01 71.1% 85.7%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 56.0 5.55e-01 77.6% 86.4%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.75 54.0 4.45e-01 75.0% 94.0%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 54.0 5.74e-01 77.6% 85.3%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 51.0 4.97e-01 71.1% 78.3%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 54.0 5.47e-01 77.6% 89.3%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 55.0 5.59e-01 78.9% 83.6%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.70 50.0 5.26e-01 75.0% 98.5%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 5.05e-01 73.7% 92.3%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 49.0 4.95e-01 77.6% 89.5%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 45.0 4.25e-01 75.0% 72.8%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.63 46.0 3.96e-01 78.9% 58.9%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 3.98e-01 73.7% 77.5%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 43.0 3.69e-01 73.7% 50.4%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.61 40.0 3.77e-01 73.7% 55.3%
3t05A02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.61 43.0 3.92e-01 73.7% 56.7%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 43.0 2.94e-01 75.0% 25.9%
1v7pB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.60 42.0 3.52e-01 72.4% 78.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 4.13e-01 72.4% 89.3%
5b1rA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.57 39.0 3.41e-01 71.1% 71.6%
1sb2B00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.57 39.0 3.39e-01 72.4% 77.4%
1rpyB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 40.0 3.90e-01 78.9% 95.3%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 39.0 3.28e-01 76.3% 92.0%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 37.0 3.19e-01 71.1% 99.2%
2bjfA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.54 43.0 2.87e-01 88.2% 84.6%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.53 36.0 3.15e-01 71.1% 47.5%
3hbcA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.53 43.0 2.89e-01 90.8% 75.7%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.50 38.0 3.32e-01 84.2% 70.4%
2rjqA02 3.40.1620.60 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.50 34.0 3.49e-01 71.1% 76.7%
ECOD (85)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4583465 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.89 57.0 6.98e-01 71.1% 100.0%
4946028 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 61.0 5.72e-01 72.4% 75.6%
4284598 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.87 61.0 5.71e-01 72.4% 75.6%
4534931 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.87 56.0 5.66e-01 71.1% 66.7%
4585317 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.87 58.0 6.74e-01 73.7% 94.5%
4937705 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.86 61.0 5.76e-01 73.7% 76.7%
4059465 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.86 61.0 6.47e-01 73.7% 88.2%
3675341 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.86 57.0 6.66e-01 73.7% 94.5%
3436022 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.86 57.0 6.65e-01 73.7% 94.5%
4252943 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.85 55.0 6.66e-01 71.1% 100.0%
5050368 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.85 62.0 5.58e-01 75.0% 72.4%
3675511 4.1.1.75 ↗ beta barrels › SH3 › SH3 › SH3 › NdhS 0.85 62.0 6.12e-01 76.3% 91.3%
3416068 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.84 60.0 4.61e-01 73.7% 71.6%
5042892 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.84 59.0 6.54e-01 72.4% 98.3%
4112177 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.84 60.0 6.42e-01 73.7% 90.8%
4461457 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 59.0 6.36e-01 72.4% 90.6%
3581896 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.84 59.0 6.34e-01 72.4% 86.2%
4432330 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.84 54.0 6.49e-01 71.1% 100.0%
3879653 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.83 57.0 6.01e-01 71.1% 87.1%
4177200 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.83 58.0 6.78e-01 72.4% 100.0%
5001589 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.83 63.0 5.65e-01 78.9% 70.0%
4053957 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.83 53.0 6.41e-01 71.1% 100.0%
4932609 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 61.0 6.60e-01 77.6% 95.4%
3440094 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.83 59.0 6.60e-01 75.0% 100.0%
5067227 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 59.0 5.78e-01 75.0% 81.9%
4932696 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.82 61.0 5.52e-01 77.6% 71.0%
4336500 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.81 56.0 6.52e-01 80.3% 100.0%
3696171 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 61.0 3.76e-01 78.9% 35.6%
4984882 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.81 58.0 6.06e-01 75.0% 90.0%
4168737 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 58.0 5.90e-01 76.3% 93.2%
4938828 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 54.0 6.08e-01 71.1% 90.0%
3866038 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.79 54.0 5.24e-01 71.1% 63.5%
1394554 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.79 56.0 6.01e-01 73.7% 95.3%
3922903 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.79 55.0 6.15e-01 73.7% 100.0%
4141828 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.78 57.0 5.82e-01 76.3% 93.2%
3246086 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 59.0 5.41e-01 78.9% 74.7%
4547801 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 56.0 5.27e-01 75.0% 71.1%
3317030 4.1.1.366 ↗ beta barrels › SH3 › SH3 › SH3 › PF26738 0.78 54.0 6.01e-01 72.4% 100.0%
3738641 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.78 58.0 5.92e-01 78.9% 89.3%
3414167 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 58.0 4.15e-01 78.9% 29.8%
3706223 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 56.0 5.01e-01 76.3% 65.7%
3622139 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 58.0 5.45e-01 78.9% 71.1%
4061621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 56.0 4.08e-01 76.3% 34.4%
3917568 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 58.0 4.95e-01 78.9% 54.8%
3485965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 58.0 6.41e-01 82.9% 100.0%
3926175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 57.0 5.53e-01 78.9% 78.8%
3595283 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 57.0 4.88e-01 77.6% 61.7%
3607985 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 56.0 4.95e-01 76.3% 64.8%
3924213 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 57.0 5.28e-01 78.9% 65.3%
4118011 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.76 54.0 5.24e-01 75.0% 95.3%
4026282 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 57.0 5.37e-01 78.9% 71.1%
3598125 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 52.0 5.27e-01 71.1% 81.3%
3251940 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.76 56.0 5.67e-01 77.6% 84.0%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.75 62.0 4.89e-01 86.8% 78.6%
4420340 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 52.0 5.79e-01 72.4% 100.0%
3409587 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 57.0 5.40e-01 80.3% 72.2%
3328647 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.75 54.0 5.19e-01 75.0% 77.6%
4087011 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 53.0 4.90e-01 73.7% 80.0%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.74 59.0 6.02e-01 85.5% 93.3%
4470603 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.74 56.0 4.31e-01 80.3% 40.0%
3397845 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 53.0 4.74e-01 75.0% 67.6%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 52.0 5.66e-01 75.0% 100.0%
3457163 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.73 61.0 6.05e-01 89.5% 87.5%
3176702 219.1.1.115 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C 0.73 51.0 4.05e-01 73.7% 56.1%
3456496 4.1.1.75 ↗ beta barrels › SH3 › SH3 › SH3 › NdhS 0.73 66.0 5.74e-01 100.0% 80.9%
5004050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 62.0 6.44e-01 93.4% 100.0%
3281618 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.72 51.0 4.69e-01 75.0% 80.0%
5022491 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.72 51.0 4.90e-01 73.7% 78.8%
3847592 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 59.0 3.55e-01 86.8% 22.4%
3281945 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 51.0 4.84e-01 75.0% 80.0%
4975478 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.71 51.0 4.91e-01 75.0% 96.5%
5035742 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 49.0 5.39e-01 72.4% 100.0%
5037849 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.70 54.0 4.55e-01 81.6% 55.2%
3587337 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.70 52.0 4.17e-01 78.9% 44.0%
3592013 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 57.0 4.91e-01 86.8% 94.8%
3387119 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 50.0 4.71e-01 75.0% 73.3%
3512419 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 56.0 5.37e-01 85.5% 87.1%
4938445 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.69 52.0 4.30e-01 80.3% 51.1%
4079197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 48.0 4.66e-01 72.4% 69.4%
1503651 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.68 58.0 5.79e-01 96.1% 96.2%
3656401 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 55.0 5.55e-01 90.8% 89.3%
146236 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.66 56.0 4.99e-01 93.4% 64.8%
4938919 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 48.0 5.13e-01 78.9% 95.4%
1758803 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.61 41.0 4.45e-01 73.7% 82.8%
None — 0.53 42.0 2.81e-01 86.8% 73.8%