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OQ079155.1__WCD55650.1__VAITEPHAGE_11__00011

Bact-Vir

OQ079155.1__WCD55650.1__VAITEPHAGE_11__00011

Identity

Accession:
OQ079155 ↗
Kingdom:
phage

Quality

89.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_Vaitephage

TaxID: 3017797

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-98
PDB
Domain cluster: rep: IMGVR_UViG_3300010413_000481-3300010413-Ga0136851_100231327__D18-57_136-181
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05135.20 best Phage_connect_1 31.1 3.70e-07 95.6% 65.3%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jvoA00 1.10.3230.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › Phage gp6-like head-tail connector protein 0.89 80.0 7.84e-01 100.0% 88.5%
2z1qB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.67 45.0 3.97e-01 70.0% 58.8%
2l2dA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.67 34.0 3.81e-01 83.3% 61.6%
1wgwA00 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.64 42.0 4.16e-01 85.6% 61.6%
1xg2B00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.61 42.0 3.55e-01 71.1% 60.3%
3owaB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.60 44.0 3.67e-01 76.7% 70.1%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.59 40.0 3.37e-01 70.0% 90.2%
2c5zA00 1.10.1740.100 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Set2, Rpb1 interacting domain 0.58 43.0 4.29e-01 80.0% 76.3%
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.58 36.0 3.67e-01 83.3% 62.9%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 39.0 3.90e-01 70.0% 73.9%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 35.0 4.18e-01 75.6% 96.6%
1cpcB00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.56 42.0 3.48e-01 82.2% 45.3%
4ar9A02 1.10.390.20 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › 0.55 41.0 3.57e-01 80.0% 63.4%
2dodA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.54 28.0 2.96e-01 97.8% 52.4%
2ze7A02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.54 40.0 3.85e-01 76.7% 82.4%
8gr7A01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.54 46.0 3.25e-01 100.0% 49.2%
4f7nB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 40.0 3.51e-01 94.4% 54.4%
6mh4A03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.51 38.0 4.00e-01 77.8% 94.9%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3947908 4275.1.1.1 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Phage_connect_1 0.93 86.0 8.64e-01 100.0% 96.7%
377920 4275.1.1.1 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Phage_connect_1 0.89 80.0 7.83e-01 100.0% 87.6%
3963507 4275.1.1.1 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Phage_connect_1 0.83 78.0 7.22e-01 100.0% 90.9%
4031309 4275.1.1.1 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Phage_connect_1 0.81 73.0 7.38e-01 100.0% 96.7%
4032613 4275.1.1.1 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Phage_connect_1 0.78 71.0 6.76e-01 100.0% 84.8%
5040765 4275.1.1.0 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.71 65.0 6.07e-01 100.0% 93.6%
4931613 140.1.1.11 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.64 47.0 3.63e-01 76.7% 100.0%
4972788 601.2.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes 0.58 40.0 3.74e-01 71.1% 57.3%
3251657 142.1.1.5 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI 0.56 44.0 4.61e-01 84.4% 96.2%
5027041 102.3.1.0 ↗ alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain 0.55 37.0 3.86e-01 84.4% 75.3%
3962658 106.1.1.6 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › MPAB_Lcp_cat 0.54 44.0 3.26e-01 91.1% 68.0%
4302386 140.1.1.11 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.51 37.0 3.11e-01 76.7% 50.0%
3802084 6155.1.1.14 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › Rer1 0.50 37.0 3.56e-01 81.1% 67.6%