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OQ079156.1__WCD55697.1__ROCKET24_2__00002

Bact-Vir

OQ079156.1__WCD55697.1__ROCKET24_2__00002

Identity

Accession:
OQ079156 ↗
Kingdom:
phage

Quality

92.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Thalassavirus› Vibrio_phage_Rocket24

TaxID: 3017796

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-72
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.69 41.0 3.53e-01 72.5% 38.7%
1ej6B00 3.90.1830.10 Alpha Beta › Alpha-Beta Complex › Inner capsid protein lambda-1 › Inner capsid protein lambda-1 0.65 48.0 2.65e-01 79.7% 48.7%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.64 48.0 5.08e-01 98.6% 96.6%
4phtY02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.63 37.0 3.86e-01 76.8% 62.9%
4a2lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 47.0 3.03e-01 79.7% 20.4%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.62 41.0 4.57e-01 89.9% 96.0%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 4.51e-01 89.9% 100.0%
5towB02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 37.0 2.78e-01 76.8% 26.9%
5hqgA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 46.0 2.96e-01 84.1% 20.1%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 46.0 4.40e-01 100.0% 72.9%
4k7zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 43.0 2.97e-01 76.8% 60.7%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 49.0 3.87e-01 95.7% 80.9%
4flnA02 3.20.190.20 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › 0.58 47.0 3.63e-01 88.4% 82.2%
4k17B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 3.92e-01 88.4% 64.0%
1irxA02 2.30.30.300 Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like 0.56 35.0 3.95e-01 75.4% 97.7%
6efaA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 42.0 4.05e-01 79.7% 88.5%
1a0rB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 45.0 2.89e-01 88.4% 19.8%
1w97L02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.56 37.0 3.66e-01 76.8% 62.7%
1yr1A00 3.40.50.10960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 43.0 3.63e-01 84.1% 90.8%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.79e-01 87.0% 68.2%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.55 48.0 4.61e-01 100.0% 95.1%
1onfA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 43.0 3.59e-01 84.1% 94.9%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 47.0 3.54e-01 100.0% 88.5%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.91e-01 87.0% 72.0%
3ot2A00 3.90.1570.10 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A 0.54 44.0 3.27e-01 91.3% 70.9%
3e9mB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 45.0 3.37e-01 100.0% 73.7%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.53 36.0 4.05e-01 82.6% 100.0%
3d1cA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 42.0 3.57e-01 85.5% 97.4%
3gasA01 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.53 40.0 3.90e-01 82.6% 93.7%
4ad8A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 2.88e-01 91.3% 79.0%
5twbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 40.0 2.80e-01 81.2% 89.1%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.53 35.0 3.61e-01 75.4% 72.7%
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 38.0 3.78e-01 76.8% 100.0%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.53 41.0 3.70e-01 87.0% 95.9%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 39.0 2.90e-01 78.3% 85.1%
3v5nB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 44.0 3.34e-01 100.0% 72.8%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 41.0 3.74e-01 88.4% 100.0%
2wm1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.52 42.0 2.80e-01 95.7% 24.4%
1vw4400 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 41.0 3.43e-01 98.6% 47.1%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 3.47e-01 89.9% 94.4%
3zi1A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 43.0 3.62e-01 100.0% 82.2%
4v0bA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.51 34.0 3.52e-01 71.0% 73.0%
3hbkA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 41.0 2.96e-01 92.8% 63.2%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 40.0 2.85e-01 92.8% 93.1%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3604264 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 60.0 5.32e-01 97.1% 82.0%
3574696 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.67 47.0 2.90e-01 73.9% 30.7%
3450480 5.1.4.297 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.66 46.0 3.11e-01 72.5% 24.9%
3887028 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 51.0 3.24e-01 84.1% 20.3%
4269256 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.65 50.0 5.25e-01 95.7% 98.3%
3736099 6043.1.1.4 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 0.64 48.0 2.98e-01 78.3% 57.5%
2330317 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.64 48.0 5.08e-01 98.6% 96.6%
3598659 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 43.0 2.68e-01 71.0% 17.2%
4388250 5.1.4.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Reg_prop 0.63 47.0 2.98e-01 78.3% 21.8%
3622974 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.63 44.0 3.71e-01 72.5% 52.2%
3430041 5.1.10.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › DUF295 0.63 44.0 3.79e-01 72.5% 56.2%
3333777 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 48.0 3.20e-01 81.2% 27.1%
4026595 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.62 48.0 4.43e-01 82.6% 100.0%
5034254 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.62 48.0 4.96e-01 100.0% 95.4%
3596820 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 48.0 2.98e-01 84.1% 21.5%
3961546 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.62 49.0 5.02e-01 100.0% 95.4%
4662947 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.61 48.0 4.98e-01 100.0% 92.3%
5036616 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 49.0 4.92e-01 100.0% 90.0%
4027435 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 48.0 3.17e-01 84.1% 26.8%
2697704 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 46.0 4.76e-01 100.0% 92.3%
4937178 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 47.0 4.77e-01 100.0% 93.8%
5043091 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 47.0 4.75e-01 100.0% 91.2%
3331028 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 47.0 2.85e-01 84.1% 16.3%
5040230 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 47.0 4.81e-01 100.0% 95.4%
3841271 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.60 44.0 3.14e-01 79.7% 67.9%
3705669 3939.1.1.0 ↗ alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.60 47.0 2.82e-01 84.1% 15.8%
4968248 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 46.0 4.59e-01 100.0% 85.7%
5019383 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 47.0 4.60e-01 100.0% 82.7%
4964421 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.59 46.0 4.75e-01 100.0% 95.4%
3947085 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.59 47.0 4.70e-01 100.0% 88.6%
5058270 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.59 46.0 4.78e-01 100.0% 100.0%
4142364 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.59 46.0 4.68e-01 100.0% 93.8%
3859494 5.1.4.304 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.59 46.0 2.87e-01 84.1% 16.8%
3254075 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 48.0 3.05e-01 89.9% 20.3%
3692252 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.59 49.0 2.97e-01 92.8% 22.8%
3260051 4161.1.1.0 ↗ beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.59 46.0 3.12e-01 87.0% 40.3%
5028692 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.59 46.0 4.68e-01 100.0% 95.4%
5076401 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.59 45.0 4.50e-01 100.0% 87.1%
4056487 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.58 45.0 4.56e-01 100.0% 88.6%
None — 0.58 46.0 3.03e-01 85.5% 22.1%
5029186 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.58 45.0 4.59e-01 100.0% 95.4%
4952854 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.58 45.0 4.63e-01 100.0% 95.4%
3682542 5.1.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › WD40 0.58 45.0 3.41e-01 84.1% 40.0%
4932588 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.57 45.0 4.57e-01 100.0% 95.4%
3582902 5.1.10.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › SSL_N 0.57 44.0 3.60e-01 82.6% 61.6%
3840052 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 34.0 3.93e-01 79.7% 100.0%
4938120 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.56 44.0 4.40e-01 100.0% 88.6%
3834747 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.56 44.0 4.41e-01 100.0% 88.6%
3214129 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 3.70e-01 88.4% 60.0%
3256547 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 3.94e-01 87.0% 69.0%
3934615 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 44.0 3.02e-01 91.3% 29.5%
4997242 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.55 42.0 2.87e-01 85.5% 85.6%
5055849 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.55 41.0 4.19e-01 100.0% 89.2%
4862202 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.55 33.0 3.72e-01 76.8% 81.6%
4009688 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.54 39.0 4.05e-01 100.0% 87.7%
4325664 330.7.1.0 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.53 36.0 3.83e-01 84.1% 81.7%
3512316 5.1.5.69 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nbas_N 0.53 43.0 2.71e-01 88.4% 28.1%
3300848 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.53 34.0 3.02e-01 81.2% 42.7%
3215500 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 38.0 4.12e-01 84.1% 100.0%
4403880 310.3.1.8 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › T2SSM_b 0.52 38.0 3.07e-01 78.3% 77.9%
9248 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.52 43.0 3.61e-01 89.9% 94.9%
3290370 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.52 40.0 2.67e-01 81.2% 86.2%
3839435 330.9.1.0 ↗ a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p 0.52 43.0 4.20e-01 92.8% 86.7%
3222817 2.1.1.71 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TTC5_OB 0.52 37.0 3.19e-01 78.3% 84.2%
3896415 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.52 40.0 3.71e-01 88.4% 75.8%
3616330 77.3.1.4 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 0.51 36.0 2.94e-01 73.9% 43.7%
4294910 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.51 35.0 3.92e-01 94.2% 90.9%