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OQ079156.1__WCD55732.1__ROCKET24_37__00037

Bact-Vir

OQ079156.1__WCD55732.1__ROCKET24_37__00037

Identity

Accession:
OQ079156 ↗
Kingdom:
phage

Quality

77.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Thalassavirus› Vibrio_phage_Rocket24

TaxID: 3017796

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 55-146
PDB
Domain cluster: rep: NC_014661.1__YP_004009850.1__Acj61p233__00233__D615-699
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 46.0 5.34e-01 83.7% 90.8%
1fuwA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 49.0 4.96e-01 82.6% 100.0%
6grrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 48.0 4.69e-01 82.6% 89.1%
3kf8B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 41.0 3.78e-01 70.7% 80.8%
1ksiA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 46.0 4.61e-01 83.7% 95.8%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 47.0 4.87e-01 90.2% 90.8%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 4.57e-01 83.7% 90.7%
3loyA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 45.0 4.46e-01 84.8% 94.1%
3e1eC00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 45.0 3.91e-01 82.6% 89.4%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 44.0 3.44e-01 82.6% 77.4%
2qguA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 4.21e-01 89.1% 98.0%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 4.09e-01 89.1% 98.2%
1ux6A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 3.11e-01 83.7% 75.5%
3dsmA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.99e-01 95.7% 28.1%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4963006 4.1.1.490 ↗ beta barrels › SH3 › SH3 › SH3 › PF26269 0.70 52.0 5.38e-01 94.6% 84.7%
3974671 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.69 59.0 6.13e-01 100.0% 100.0%
3680814 5.1.4.15 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RPE65 0.62 50.0 3.34e-01 85.9% 31.4%
4032717 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.61 46.0 5.08e-01 85.9% 98.6%
3192395 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.61 50.0 4.88e-01 88.0% 90.0%
4424927 243.5.1.4 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › AGAO-like_N2 0.58 48.0 4.77e-01 89.1% 86.3%
4238063 5.1.4.15 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RPE65 0.57 50.0 3.34e-01 96.7% 38.5%
3540912 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.55 49.0 3.39e-01 98.9% 40.6%
3596847 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 38.0 3.70e-01 72.8% 71.4%
3606702 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 48.0 3.32e-01 97.8% 50.6%
3700022 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.55 39.0 3.74e-01 73.9% 71.4%
4991720 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.51 43.0 3.93e-01 94.6% 72.8%
D2 high residues 262-424
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a21A03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.70 39.0 4.85e-01 84.7% 88.1%
4ohvA01 2.60.120.1030 Mainly Beta › Sandwich › Jelly Rolls › Clp1, DNA binding domain 0.68 33.0 4.67e-01 75.5% 96.2%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.61 34.0 4.08e-01 74.8% 84.2%
4devD01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 34.0 3.88e-01 82.8% 72.0%
3t30C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.60 32.0 3.96e-01 74.8% 85.3%
2x8kA03 2.60.120.860 Mainly Beta › Sandwich › Jelly Rolls › 0.59 37.0 4.43e-01 73.6% 91.9%
3w5mA04 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 36.0 4.09e-01 83.4% 80.8%
2hr0B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 35.0 4.20e-01 73.6% 91.7%
4gwmA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 37.0 3.73e-01 87.7% 64.6%
2c9aA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 34.0 3.48e-01 82.2% 61.1%
2w1nA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 28.0 3.72e-01 71.2% 92.7%
2qqkA02 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.55 30.0 3.51e-01 84.0% 73.9%
2c9kA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 35.0 3.57e-01 84.0% 65.9%
2zxqA04 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 35.0 3.59e-01 74.8% 68.6%
1uwwB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 38.0 3.71e-01 83.4% 67.0%
2a6vB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 39.0 3.54e-01 76.1% 78.3%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 38.0 4.06e-01 74.8% 95.0%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 4.26e-01 81.0% 100.0%
2wkkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 4.14e-01 80.4% 95.3%
2erfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 3.70e-01 80.4% 80.4%
4qt6A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.51 38.0 3.88e-01 76.7% 84.3%
1yi9A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 4.26e-01 89.6% 97.8%
4icwA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.50 32.0 3.48e-01 77.9% 76.9%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3276836 10.4.1.25 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › PF26736 0.78 37.0 5.14e-01 73.6% 89.3%
5039364 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.65 36.0 4.64e-01 74.2% 96.7%
4003995 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 40.0 4.20e-01 83.4% 67.3%
3229633 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 37.0 4.31e-01 82.2% 84.3%
3794359 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.61 33.0 3.86e-01 74.8% 73.0%
3939502 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 37.0 4.35e-01 82.2% 86.1%
5050767 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 34.0 4.02e-01 74.2% 80.0%
2553957 10.2.1.55 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.60 33.0 4.05e-01 82.2% 87.5%
3611495 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 36.0 3.89e-01 82.8% 69.3%
3827637 207.1.1.37 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › C-JID 0.60 37.0 3.24e-01 83.4% 41.2%
4663349 10.32.1.8 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.59 33.0 3.67e-01 74.2% 66.9%
3188434 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 39.0 3.93e-01 81.6% 65.5%
3396410 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.59 36.0 3.60e-01 82.8% 57.1%
3563703 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.58 33.0 3.80e-01 84.7% 75.0%
3212672 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.58 32.0 3.80e-01 74.8% 79.1%
3536478 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.57 32.0 3.67e-01 83.4% 73.9%
4957046 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 41.0 4.27e-01 74.2% 87.7%
3928295 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 41.0 3.84e-01 76.1% 76.5%
3612035 10.2.1.55 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.55 32.0 3.76e-01 82.2% 83.6%
3211142 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.55 31.0 3.57e-01 83.4% 76.5%
3939969 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.54 42.0 3.45e-01 82.2% 88.0%
3525668 10.32.1.69 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › LAMININ_IV_B 0.52 41.0 3.72e-01 82.2% 75.5%
3389888 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.52 38.0 3.80e-01 74.8% 84.1%
2722036 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.52 38.0 4.06e-01 74.8% 95.0%
397505 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.52 40.0 4.26e-01 81.0% 100.0%
5081344 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 35.0 3.43e-01 76.7% 62.2%
1867076 10.1.1.18 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Sialidase 0.51 39.0 3.77e-01 79.8% 89.4%
3390429 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 38.0 4.02e-01 82.2% 85.5%
3252445 11.2.1.19 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF3657 0.51 37.0 3.20e-01 74.2% 92.8%
3815174 10.32.1.231 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › APD1-4_M 0.51 32.0 3.74e-01 83.4% 89.6%
5018354 10.18.1.0 ↗ beta sandwiches › jelly-roll › VPA0735-like › VPA0735-like 0.50 42.0 3.71e-01 91.4% 81.6%
D3 medium residues 477-545
PDB
Domain cluster: rep: HM114315.1__ADJ19563.1__Acj133p248__00248__D230-307