←Back to structures

OQ079156.1__WCD55852.1__ROCKET24_179__00157

Bact-Vir

OQ079156.1__WCD55852.1__ROCKET24_179__00157

Identity

Accession:
OQ079156 ↗
Kingdom:
phage

Quality

84.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Thalassavirus› Vibrio_phage_Rocket24

TaxID: 3017796

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-62
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 58.0 5.37e-01 100.0% 73.1%
1ldjA06 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 60.0 5.78e-01 100.0% 97.1%
7pb9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 61.0 5.87e-01 100.0% 95.6%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 58.0 5.27e-01 100.0% 75.0%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 46.0 4.37e-01 81.4% 60.6%
6az1a00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 5.07e-01 100.0% 75.0%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 55.0 5.35e-01 100.0% 84.8%
2pexA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 4.08e-01 100.0% 39.0%
1epuA03 1.25.40.60 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.65 47.0 3.75e-01 100.0% 37.1%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 56.0 4.71e-01 100.0% 60.0%
2ek5B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 56.0 4.65e-01 100.0% 54.1%
2l2oA00 1.10.10.1540 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain 0.65 55.0 4.96e-01 100.0% 81.2%
3majA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 4.96e-01 100.0% 83.3%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 55.0 4.70e-01 100.0% 60.0%
4p9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 54.0 5.18e-01 100.0% 83.6%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 4.79e-01 100.0% 69.0%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 53.0 5.33e-01 100.0% 95.0%
5f7qC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 54.0 5.19e-01 100.0% 90.0%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 4.79e-01 100.0% 72.5%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 54.0 5.22e-01 100.0% 92.4%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 5.09e-01 100.0% 92.1%
4p72A04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.57 41.0 3.88e-01 79.7% 63.2%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.56 38.0 3.64e-01 79.7% 59.2%
6hn7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 3.69e-01 78.0% 66.7%
2bbwA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 36.0 2.57e-01 72.9% 33.2%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5051627 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.86 70.0 6.62e-01 100.0% 74.3%
3932294 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 66.0 6.04e-01 100.0% 77.5%
4938704 101.1.2.750 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27374 0.72 65.0 5.42e-01 100.0% 62.0%
5010522 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 64.0 5.59e-01 100.0% 67.4%
5016955 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 61.0 5.04e-01 100.0% 56.4%
5029304 101.1.2.279 ↗ alpha arrays › HTH › HTH › winged helix domain › AbiEi_4 0.70 59.0 5.90e-01 100.0% 95.0%
4968989 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 60.0 5.32e-01 100.0% 68.2%
5048979 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 59.0 5.64e-01 100.0% 85.7%
4935367 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 53.0 5.49e-01 96.6% 94.5%
3096050 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.68 51.0 4.27e-01 100.0% 45.8%
3978394 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 57.0 5.57e-01 100.0% 92.3%
5077794 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 57.0 5.41e-01 100.0% 82.9%
4946410 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 54.0 4.93e-01 100.0% 67.5%
5049150 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 5.36e-01 100.0% 86.2%
4963272 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 4.77e-01 100.0% 58.0%
3063449 101.1.2.44 ↗ alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S25 0.66 53.0 5.07e-01 100.0% 76.1%
4994167 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 5.54e-01 100.0% 95.0%
3500577 101.1.2.6 ↗ alpha arrays › HTH › HTH › winged helix domain › GntR 0.66 56.0 5.12e-01 100.0% 71.2%
5072945 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 56.0 5.60e-01 100.0% 96.7%
5012611 101.1.2.143 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.65 57.0 4.82e-01 100.0% 60.0%
5045250 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 5.32e-01 100.0% 82.9%
3743925 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.65 54.0 5.09e-01 100.0% 76.0%
5043785 101.1.2.44 ↗ alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S25 0.65 55.0 5.24e-01 100.0% 81.4%
3617783 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 55.0 4.95e-01 100.0% 68.2%
4975296 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 55.0 5.37e-01 100.0% 89.2%
3557944 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.64 53.0 5.00e-01 100.0% 76.0%
3502634 101.1.2.503 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25875 0.64 55.0 5.40e-01 100.0% 90.8%
2588 101.1.2.143 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.64 55.0 4.70e-01 100.0% 60.0%
4977904 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 56.0 5.59e-01 100.0% 98.3%
3395053 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.64 55.0 5.24e-01 100.0% 85.7%
4032512 101.1.2.6 ↗ alpha arrays › HTH › HTH › winged helix domain › GntR 0.64 55.0 4.99e-01 100.0% 71.2%
3273469 101.1.2.281 ↗ alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.64 54.0 4.91e-01 100.0% 71.1%
5010437 101.1.2.650 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.64 53.0 5.32e-01 98.3% 95.0%
3598643 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 53.0 5.12e-01 100.0% 88.6%
4027211 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 52.0 3.16e-01 100.0% 13.7%
4997341 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 51.0 4.98e-01 100.0% 86.2%
3503709 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.62 53.0 4.98e-01 100.0% 79.7%
4966113 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 53.0 5.19e-01 100.0% 92.3%
5045993 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 50.0 4.96e-01 100.0% 87.7%
5026926 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 4.95e-01 100.0% 85.1%
3819120 101.1.2.120 ↗ alpha arrays › HTH › HTH › winged helix domain › DDRGK 0.62 49.0 4.24e-01 100.0% 53.3%
3426986 101.1.2.503 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25875 0.61 51.0 4.99e-01 100.0% 89.2%
5082541 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 51.0 4.57e-01 100.0% 67.8%
4541674 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.60 51.0 4.96e-01 98.3% 92.3%
5011494 7565.1.1.1 ↗ a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.60 41.0 2.88e-01 74.6% 24.2%
4024063 101.1.2.28 ↗ alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.59 51.0 4.35e-01 96.6% 61.1%
3364438 101.1.2.75 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIF_alpha 0.56 47.0 4.60e-01 100.0% 92.3%
3622943 101.1.2.28 ↗ alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.55 44.0 4.08e-01 89.8% 80.0%
3609317 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 44.0 4.08e-01 100.0% 72.5%
3596092 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.51 40.0 3.64e-01 96.6% 75.6%
D2 medium residues 69-109
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.64 50.0 3.23e-01 95.1% 42.9%
4b6lA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.63 48.0 3.27e-01 95.1% 22.0%
2bujA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.62 47.0 3.16e-01 95.1% 19.4%
2p38A01 3.10.450.220 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 43.0 3.69e-01 97.6% 84.4%
2fauA01 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 41.0 2.90e-01 80.5% 25.8%
4azsA03 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.58 44.0 3.24e-01 97.6% 28.9%
1vc9A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 44.0 3.31e-01 95.1% 64.8%
1qr0A02 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.55 38.0 2.96e-01 70.7% 36.9%
2ii3A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.54 42.0 2.70e-01 90.2% 72.8%
4ynzB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 38.0 2.69e-01 92.7% 31.1%
3ou2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 40.0 2.68e-01 95.1% 92.6%
3on7B00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.51 39.0 2.48e-01 95.1% 74.8%
4n0rA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.50 36.0 2.33e-01 95.1% 91.6%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4536357 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.93 81.0 4.93e-01 100.0% 17.3%
3943422 3609.1.1.4 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › ArdcN 0.91 81.0 7.97e-01 97.6% 97.7%
3598618 3609.1.1.0 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain 0.87 76.0 6.27e-01 100.0% 55.4%
3612863 3609.1.1.3 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › Tc-38 0.87 78.0 4.80e-01 100.0% 18.8%
3701072 3609.1.1.3 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › Tc-38 0.87 74.0 6.09e-01 95.1% 54.3%
3705270 3609.1.1.3 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › Tc-38 0.81 67.0 5.21e-01 100.0% 41.8%
3809248 3609.1.1.2 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › BHD_2 0.80 73.0 6.34e-01 100.0% 100.0%
223780 3609.1.1.0 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain 0.78 70.0 6.88e-01 100.0% 97.7%
3700995 3609.1.1.0 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain 0.74 62.0 5.35e-01 100.0% 60.3%
4941925 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 47.0 4.26e-01 100.0% 96.9%
3652079 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.56 44.0 3.36e-01 95.1% 47.0%
5015285 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 40.0 2.40e-01 80.5% 9.2%
3555931 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.53 36.0 2.82e-01 78.0% 76.5%
3988557 2003.1.5.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.52 36.0 2.30e-01 80.5% 44.8%
3467496 2004.1.1.2 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 36.0 2.34e-01 75.6% 82.3%
3800269 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 36.0 2.73e-01 90.2% 88.7%
3954394 304.51.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › RAMPs 0.50 35.0 2.08e-01 73.2% 45.9%
4035697 5054.1.1.7 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › KdpA 0.50 35.0 2.56e-01 73.2% 25.0%