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OQ101249.1__WDS61412.1__Acba4_072__00013

Bact-Vir

OQ101249.1__WDS61412.1__Acba4_072__00013

Identity

Accession:
OQ101249 ↗
Kingdom:
phage

Quality

86.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Acinetobacter_phage_Acba_4

TaxID: 3024173

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-74
PDB
Domain cluster: rep: OR067835.1__WLW41014.1__IBHPHPPA_00014__00014__D3-72
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 35.0 3.29e-01 83.8% 43.0%
2ltsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 49.0 4.69e-01 100.0% 76.7%
1ywqA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.61 47.0 3.53e-01 86.5% 72.9%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.60 44.0 4.02e-01 79.7% 71.8%
3g8qA02 3.30.70.1940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 43.0 4.22e-01 95.9% 70.0%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 46.0 4.43e-01 86.5% 92.0%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.59 38.0 3.91e-01 83.8% 69.0%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.59 52.0 4.18e-01 100.0% 78.6%
2qzbA00 2.60.460.10 Mainly Beta › Sandwich › protein yfey like fold › protein yfey like domain 0.58 44.0 3.54e-01 100.0% 41.4%
5fiiB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 43.0 4.31e-01 93.2% 78.2%
2f1fA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 43.0 4.27e-01 95.9% 77.2%
4efjA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 44.0 3.62e-01 86.5% 56.4%
1wjwA01 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.56 39.0 3.80e-01 90.5% 64.7%
1xkpB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 49.0 4.21e-01 100.0% 89.3%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 41.0 3.92e-01 95.9% 65.6%
4z1xA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 40.0 3.30e-01 78.4% 43.4%
2x7gA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 43.0 4.14e-01 85.1% 81.8%
3s1tA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 42.0 4.14e-01 95.9% 77.5%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 42.0 3.79e-01 86.5% 70.3%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.55 37.0 3.63e-01 98.6% 63.4%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 44.0 4.55e-01 100.0% 97.2%
1j4wA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.54 40.0 4.04e-01 94.6% 79.7%
2jzxA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.54 36.0 3.59e-01 70.3% 87.3%
4dg8A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.54 45.0 4.19e-01 95.9% 73.9%
8hbfB01 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.53 42.0 3.20e-01 86.5% 50.3%
2ab5A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 40.0 3.44e-01 85.1% 58.2%
4dkkA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 43.0 4.31e-01 100.0% 91.9%
2ogkD00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.53 45.0 3.74e-01 100.0% 64.8%
2n8lA00 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.53 42.0 3.22e-01 91.9% 77.5%
4e5xG00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.70e-01 83.8% 69.7%
2joqA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 39.0 3.96e-01 95.9% 81.3%
2wnyA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.52 44.0 3.73e-01 100.0% 63.5%
4fd7A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 43.0 3.09e-01 94.6% 99.2%
2cg8B02 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.52 41.0 3.44e-01 97.3% 49.2%
2lfvA00 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.52 37.0 3.41e-01 78.4% 58.5%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 45.0 4.18e-01 95.9% 83.7%
1tkjA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 45.0 3.07e-01 100.0% 26.4%
1vdhA01 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.51 35.0 3.03e-01 93.2% 43.0%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 34.0 2.68e-01 71.6% 37.2%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 3.86e-01 95.9% 69.7%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 40.0 3.25e-01 87.8% 86.3%
3pm9A04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 41.0 3.95e-01 95.9% 77.0%
2mcfA00 3.40.50.11630 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 44.0 3.58e-01 100.0% 53.4%
1t0tV02 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.50 35.0 3.13e-01 95.9% 48.6%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3733718 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.72 55.0 5.24e-01 100.0% 70.6%
4938000 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.69 47.0 4.32e-01 70.3% 55.8%
5029220 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.66 47.0 4.48e-01 75.7% 64.4%
4647263 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.65 47.0 4.66e-01 95.9% 71.8%
4413612 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.65 46.0 4.00e-01 75.7% 53.3%
4277614 242.1.1.5 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.65 46.0 4.09e-01 75.7% 57.3%
4064719 242.1.1.5 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.65 45.0 4.03e-01 73.0% 55.2%
4681936 242.1.1.5 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.64 46.0 4.02e-01 75.7% 57.4%
3520951 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 49.0 4.60e-01 98.6% 70.0%
5041400 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 37.0 4.50e-01 77.0% 100.0%
3969151 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.60 44.0 4.37e-01 79.7% 76.2%
2038566 304.8.1.22 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT 0.60 44.0 4.29e-01 95.9% 69.9%
3498546 304.162.1.2 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M 0.59 41.0 4.08e-01 91.9% 70.7%
4638999 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.59 41.0 4.10e-01 94.6% 68.8%
3315025 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.58 47.0 4.63e-01 100.0% 82.5%
5023262 327.11.2.82 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27275 0.58 37.0 3.89e-01 95.9% 72.3%
3544618 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.58 51.0 4.95e-01 100.0% 90.6%
3931635 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.58 42.0 4.23e-01 100.0% 77.3%
4971711 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 39.0 3.38e-01 71.6% 47.2%
3515207 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.57 46.0 4.33e-01 98.6% 73.3%
5810 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.57 45.0 4.10e-01 94.6% 64.6%
4247992 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.57 42.0 4.09e-01 81.1% 74.1%
2553760 304.12.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.57 42.0 3.77e-01 100.0% 55.7%
3952812 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.57 41.0 3.86e-01 93.2% 63.3%
4330018 330.1.1.6 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C 0.56 47.0 4.71e-01 100.0% 93.3%
3194016 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.56 43.0 2.94e-01 86.5% 95.7%
3633144 3435.1.1.2 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-N 0.56 51.0 3.75e-01 100.0% 56.4%
3587109 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.56 40.0 3.83e-01 95.9% 63.3%
3743072 3435.1.1.2 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-N 0.56 50.0 4.00e-01 100.0% 56.6%
3519032 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 47.0 4.31e-01 100.0% 70.0%
5047074 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.55 50.0 3.17e-01 100.0% 24.9%
3412939 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.55 37.0 2.47e-01 71.6% 54.4%
4373827 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.55 40.0 3.84e-01 94.6% 67.0%
3590219 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.55 39.0 3.73e-01 94.6% 63.3%
2982497 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 43.0 3.98e-01 100.0% 66.3%
4995124 882.1.1.4 ↗ a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.54 45.0 3.80e-01 100.0% 65.7%
3624927 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 46.0 4.18e-01 100.0% 72.4%
4043415 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 44.0 2.75e-01 100.0% 15.2%
4098707 304.159.1.1 ↗ a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › Lant_dehydr_C 0.54 45.0 4.08e-01 94.6% 69.0%
1481299 304.5.1.4 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CdAMP_rec 0.54 46.0 4.02e-01 95.9% 78.8%
3317524 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.53 41.0 3.04e-01 86.5% 74.3%
3515319 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.53 38.0 3.84e-01 97.3% 76.0%
3780194 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 44.0 3.14e-01 100.0% 29.0%
3376944 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 44.0 3.95e-01 95.9% 65.7%
5042043 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.53 46.0 3.14e-01 100.0% 26.7%
4986703 882.1.1.4 ↗ a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.52 44.0 3.70e-01 100.0% 66.4%
3174904 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.52 47.0 3.09e-01 100.0% 23.9%
4962642 304.8.1.123 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › HVO_0513_N 0.52 39.0 4.01e-01 95.9% 85.7%
4996301 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.52 46.0 3.07e-01 100.0% 30.5%
5070035 882.1.1.4 ↗ a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.52 43.0 3.60e-01 100.0% 61.4%
3513861 304.162.1.0 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.51 39.0 3.83e-01 95.9% 77.5%
3798829 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 41.0 3.00e-01 90.5% 84.0%
4508433 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.51 44.0 2.86e-01 100.0% 20.5%
4345964 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.51 37.0 3.49e-01 79.7% 62.1%
5026575 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.51 44.0 3.35e-01 100.0% 77.3%
3721344 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.50 41.0 3.84e-01 95.9% 72.6%
3971897 312.1.1.0 ↗ a+b three layers › HIT-like › HIT-related › HIT-related 0.50 43.0 3.47e-01 100.0% 67.1%
2723676 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.50 43.0 2.91e-01 100.0% 24.3%
5000388 304.44.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 0.50 38.0 3.60e-01 95.9% 67.8%