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OQ101258.1__WCF71964.1__ACBA16_002__00002

Bact-Vir

OQ101258.1__WCF71964.1__ACBA16_002__00002

Identity

Accession:
OQ101258 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-34
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fd0A01 3.90.1150.60 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Methioning gamme-lyase, C-terminal domain 0.84 72.0 4.44e-01 100.0% 23.8%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.78 68.0 5.62e-01 100.0% 56.5%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.77 64.0 4.58e-01 100.0% 32.1%
4od8D00 6.10.140.1880 Special › Helix non-globular › Helix Hairpins › 0.76 55.0 4.79e-01 88.2% 51.0%
4ex8A00 3.40.1790.10 Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain 0.76 65.0 3.79e-01 100.0% 13.6%
1zmbA02 6.10.170.10 Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.76 63.0 6.22e-01 97.1% 94.4%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.76 67.0 4.66e-01 100.0% 38.2%
2qm8A03 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.75 62.0 5.16e-01 100.0% 53.8%
3kd3A02 1.10.150.210 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 0.75 64.0 5.36e-01 100.0% 56.7%
3a7rA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.74 58.0 4.49e-01 97.1% 37.1%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.74 65.0 5.77e-01 100.0% 85.7%
2w43A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.74 62.0 5.26e-01 100.0% 57.9%
3dboB00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.74 62.0 4.18e-01 100.0% 26.2%
3id7A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.73 64.0 3.58e-01 100.0% 11.8%
7ymiD01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.73 60.0 3.82e-01 100.0% 46.7%
3jrqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.73 56.0 3.31e-01 100.0% 10.7%
3w3sA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.73 63.0 3.56e-01 100.0% 21.2%
3zdmB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.72 61.0 5.46e-01 100.0% 76.0%
3tndA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.72 60.0 4.02e-01 100.0% 25.0%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.72 62.0 4.85e-01 100.0% 46.7%
3t69A02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.72 55.0 3.43e-01 100.0% 15.0%
3qxzA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.71 55.0 4.85e-01 100.0% 56.7%
2khvA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.71 54.0 4.29e-01 100.0% 38.8%
2yf4F00 1.10.3420.10 Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain 0.69 58.0 3.89e-01 100.0% 37.1%
2px7A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.69 55.0 3.42e-01 91.2% 49.8%
1qu7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.69 55.0 3.40e-01 100.0% 18.1%
2kkmA01 1.20.1440.170 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Translation machinery-associated protein 16-like 0.68 50.0 3.57e-01 100.0% 24.8%
3zvkA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.68 56.0 3.80e-01 100.0% 24.6%
7bqiA01 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.68 58.0 3.76e-01 97.1% 33.1%
2ygwA01 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.68 58.0 3.83e-01 100.0% 22.9%
3of4A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.67 51.0 3.26e-01 100.0% 15.9%
4exjA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.67 57.0 3.88e-01 97.1% 43.8%
1kpsB00 1.25.40.200 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ran-GTPase activating protein 1, C-terminal domain 0.66 53.0 3.58e-01 100.0% 22.4%
1xdxA01 3.30.1140.40 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 0.66 57.0 4.09e-01 100.0% 66.0%
1qd1B02 3.30.70.670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain 0.66 55.0 3.61e-01 97.1% 35.9%
1jt6A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.65 57.0 3.78e-01 100.0% 35.8%
1yzbA02 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.64 48.0 4.65e-01 100.0% 78.3%
4d6wB02 6.10.140.740 Special › Helix non-globular › Helix Hairpins › 0.63 49.0 3.88e-01 100.0% 72.8%
8e9gE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.62 45.0 4.07e-01 100.0% 54.0%
5lo9A01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.60 48.0 3.72e-01 94.1% 53.5%
1hp8A00 1.10.287.1130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › CytochromE C oxidase copper chaperone 0.59 44.0 3.87e-01 100.0% 50.0%
6e6oA00 1.20.50.10 Mainly Alpha › Up-down Bundle › Pheromone ER-1 › Pheromone ER-1 0.59 41.0 3.97e-01 82.4% 62.5%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.52 38.0 3.67e-01 94.1% 66.7%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4479213 137.1.1.1 alpha bundles › A DNA-binding domain in eukaryotic transcription factors › A DNA-binding domain in eukaryotic transcription factors › A DNA-binding domain in eukaryotic transcription factors › bZIP_Maf 0.84 70.0 4.91e-01 100.0% 29.6%
2810190 3050.1.1.7 alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal_L19e_C 0.84 70.0 6.96e-01 100.0% 91.7%
4313126 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.84 70.0 4.12e-01 100.0% 12.4%
5039692 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.83 71.0 5.14e-01 100.0% 35.8%
4024170 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.82 70.0 5.88e-01 100.0% 56.7%
5011834 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.82 67.0 5.14e-01 100.0% 40.0%
4367777 7523.1.1.41 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Lipoprotein_10 0.81 68.0 4.54e-01 100.0% 24.3%
3261624 3470.1.1.0 extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain 0.80 69.0 6.12e-01 100.0% 74.0%
4495082 7523.1.1.8 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 0.80 67.0 4.01e-01 100.0% 14.0%
2832675 2006.1.4.8 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_5 0.80 57.0 3.44e-01 88.2% 12.7%
4620052 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.79 66.0 3.77e-01 100.0% 9.3%
3698416 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.79 68.0 4.08e-01 100.0% 15.4%
3839297 213.1.1.21 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › LPG_synthase_C 0.79 66.0 4.21e-01 100.0% 22.9%
3392260 6026.1.1.0 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.79 65.0 5.30e-01 100.0% 48.6%
3723174 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.79 68.0 5.27e-01 100.0% 46.7%
4939181 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.78 68.0 5.17e-01 100.0% 43.8%
3253594 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.78 67.0 6.43e-01 100.0% 87.5%
5001813 5049.1.3.1 alpha complex topology › Ammonium transporter-related › Ammonium transporter-related › Na(+)-translocating NADH-quinone reductase subunit B › NQR2_RnfD_RnfE 0.78 63.0 3.70e-01 100.0% 11.3%
3594096 3050.1.1.0 alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain 0.78 64.0 4.28e-01 100.0% 23.4%
3969668 3758.2.1.1 alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB 0.78 66.0 4.00e-01 100.0% 14.8%
4131981 3050.1.1.7 alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal_L19e_C 0.77 63.0 4.87e-01 100.0% 41.2%
3312745 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.77 64.0 4.17e-01 100.0% 21.3%
4884356 3758.2.1.2 alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB 0.76 60.0 3.73e-01 100.0% 15.6%
3676390 3559.1.1.0 a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 0.76 65.0 4.50e-01 100.0% 29.2%
3743767 3352.1.1.19 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › Mannosyl_trans2 0.75 63.0 3.58e-01 100.0% 8.7%
3454460 359.1.1.0 few secondary structure elements › Bowman-Birk inhibitor, BBI-like › Bowman-Birk inhibitor, BBI-like › Bowman-Birk inhibitor, BBI-like 0.75 60.0 5.71e-01 100.0% 75.6%
4941346 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.75 61.0 4.81e-01 94.1% 44.0%
3785260 109.30.1.1 alpha superhelices › Repetitive alpha hairpins › Nucleoporin Nup84/Nup107 › Nucleoporin Nup84/Nup107 › Nup84_Nup100 0.75 65.0 3.60e-01 100.0% 7.1%
3700089 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.75 63.0 5.20e-01 100.0% 60.0%
3904347 6026.1.1.0 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.75 64.0 5.01e-01 100.0% 49.3%
3567359 192.15.1.45 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Pcf11_helical 0.75 61.0 4.68e-01 97.1% 38.8%
3476606 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.74 60.0 4.92e-01 97.1% 49.3%
3277630 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.74 57.0 3.98e-01 100.0% 24.5%
3587162 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 60.0 3.97e-01 97.1% 21.6%
5074692 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.74 58.0 4.08e-01 100.0% 27.8%
3958593 5043.2.1.0 extended segments › Sensor proteins transmembrane domains › NarQ transmembrane domain › NarQ transmembrane domain 0.73 59.0 4.15e-01 100.0% 27.5%
3613737 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.73 56.0 3.29e-01 100.0% 10.3%
4940509 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.73 60.0 4.33e-01 94.1% 33.0%
4386543 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.73 62.0 3.69e-01 100.0% 13.7%
3928221 4.1.1.310 beta barrels › SH3 › SH3 › SH3 › PF26050 0.72 62.0 4.12e-01 100.0% 25.0%
3355246 192.1.1.0 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.72 64.0 4.81e-01 100.0% 61.3%
4029376 2004.1.1.184 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.70 61.0 3.46e-01 100.0% 10.3%
3485769 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.70 57.0 3.63e-01 100.0% 17.9%
4991391 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.70 52.0 4.02e-01 100.0% 35.0%
3188597 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.70 63.0 4.53e-01 100.0% 57.8%
5028666 102.1.1.11 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 0.69 57.0 3.99e-01 94.1% 30.0%
3784506 6058.1.1.1 alpha arrays › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase › DAO_C 0.69 51.0 3.66e-01 100.0% 25.2%
4015612 616.1.1.0 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.68 58.0 4.42e-01 100.0% 41.2%
5079248 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.68 61.0 3.58e-01 100.0% 23.3%
3928795 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.67 59.0 4.30e-01 100.0% 75.8%
3927475 192.19.1.0 alpha bundles › Long alpha-hairpin › YnzC-like › YnzC-like 0.67 58.0 4.98e-01 100.0% 63.6%
3581421 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 54.0 2.95e-01 94.1% 21.5%
3595435 6058.1.1.0 alpha arrays › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase 0.66 49.0 3.95e-01 100.0% 37.8%
4667660 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.65 57.0 3.32e-01 100.0% 35.5%
4248629 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.63 50.0 4.63e-01 100.0% 71.1%
5083776 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.62 53.0 3.82e-01 100.0% 34.7%