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OQ116603.1__WBF54336.1__UZM3_34__00034

Bact-Vir

OQ116603.1__WBF54336.1__UZM3_34__00034

Identity

Accession:
OQ116603 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-80
PDB
D2 medium residues 81-159
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5lbmA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.90 67.0 6.63e-01 82.3% 73.5%
3k29A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.89 83.0 6.39e-01 100.0% 99.4%
4adzA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.88 66.0 6.27e-01 82.3% 67.8%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.87 71.0 6.87e-01 86.1% 77.3%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.87 80.0 5.52e-01 98.7% 42.2%
2qywA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.86 58.0 5.38e-01 77.2% 56.8%
3m7gA02 1.10.8.1010 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.86 53.0 4.92e-01 72.2% 51.6%
1wdzA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.85 77.0 5.36e-01 100.0% 33.3%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.85 67.0 6.08e-01 89.9% 64.7%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.84 64.0 6.74e-01 91.1% 88.7%
2b1eA01 1.20.58.1150 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.84 58.0 5.63e-01 72.2% 65.1%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.83 58.0 5.93e-01 77.2% 74.4%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.82 58.0 4.86e-01 79.7% 44.6%
7aalA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.82 75.0 5.08e-01 100.0% 51.9%
2efkA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.81 73.0 5.01e-01 100.0% 50.0%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 58.0 5.98e-01 77.2% 82.2%
4hteA01 1.20.58.1730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 57.0 4.70e-01 77.2% 42.7%
2pg0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.79 57.0 4.57e-01 75.9% 43.0%
4y9jA01 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.78 56.0 4.48e-01 74.7% 47.0%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.78 59.0 5.89e-01 86.1% 78.0%
2ficB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.78 68.0 5.00e-01 96.2% 58.7%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 55.0 5.77e-01 75.9% 80.6%
3syvA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.77 69.0 4.81e-01 97.5% 37.6%
1xl3C00 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.75 50.0 4.76e-01 74.7% 59.3%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.74 48.0 4.51e-01 74.7% 55.8%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.74 57.0 5.35e-01 88.6% 68.0%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.73 64.0 5.30e-01 97.5% 54.6%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.70 55.0 4.41e-01 84.8% 44.8%
3n3dB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.66 50.0 3.33e-01 81.0% 82.4%
3tp3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 41.0 3.32e-01 73.4% 39.9%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3627942 3755.4.1.1 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PI3K_P85_iSH2 0.92 80.0 5.96e-01 100.0% 41.1%
5039649 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.92 67.0 5.72e-01 75.9% 67.5%
3973453 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.91 68.0 6.83e-01 77.2% 76.2%
4022294 1025.1.1.0 alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain 0.90 68.0 6.05e-01 79.7% 59.0%
3655688 3755.3.1.303 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A_4th 0.89 82.0 6.20e-01 100.0% 44.6%
3915878 3922.1.1.65 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PLC-beta_C 0.89 84.0 5.89e-01 100.0% 37.6%
3401938 3602.1.1.14 alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › DUF733 0.89 61.0 6.34e-01 70.9% 78.7%
3222544 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.89 66.0 5.46e-01 77.2% 46.9%
3507551 192.5.1.0 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.89 69.0 6.42e-01 86.1% 67.4%
4988623 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.89 83.0 5.56e-01 100.0% 32.8%
3575794 632.8.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 0.89 66.0 5.52e-01 77.2% 48.8%
3199608 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.89 70.0 6.13e-01 91.1% 59.1%
3271160 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.88 78.0 5.50e-01 94.9% 62.7%
3861548 3755.3.1.123 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Tektin 0.88 82.0 5.18e-01 100.0% 22.9%
3549590 3755.3.1.123 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Tektin 0.88 82.0 5.23e-01 100.0% 23.9%
3626992 632.8.1.2 alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › Alpha-2-MRAP_C 0.88 64.0 5.73e-01 75.9% 57.1%
3547149 109.4.1.117 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG,SCD 0.87 72.0 4.34e-01 86.1% 15.5%
3337008 192.2.1.60 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF21A_4th 0.87 80.0 6.53e-01 100.0% 66.4%
3881899 109.4.1.1407 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG, SCD, HEAT_SCC3-SA 0.87 71.0 4.03e-01 86.1% 9.2%
3921540 109.4.1.1350 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG, SCD, HEAT_SCC3-SA, PF31007 0.87 71.0 3.91e-01 86.1% 6.5%
3971109 5086.1.1.85 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AAEA_pHBA 0.87 64.0 6.57e-01 77.2% 81.3%
1030831 5094.1.1.1 a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH 0.87 78.0 5.97e-01 100.0% 46.3%
3996264 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.85 79.0 6.02e-01 100.0% 59.4%
3318812 192.8.1.248 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › KIF21A_4th 0.84 78.0 6.18e-01 100.0% 54.7%
197440 5055.1.1.2 extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › DIP0205-like_N 0.84 64.0 6.70e-01 91.1% 87.5%
4016635 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.84 69.0 6.35e-01 89.9% 70.0%
3207024 4177.1.1.9 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Snx8_BAR_dom 0.83 75.0 5.16e-01 100.0% 30.6%
3350514 3922.1.1.145 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › KIF21A_4th 0.83 76.0 5.94e-01 100.0% 66.9%
3916865 109.4.1.117 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG,SCD 0.83 67.0 4.56e-01 86.1% 26.2%
3206976 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.83 69.0 6.05e-01 89.9% 64.3%
3737517 3560.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Med8 0.82 58.0 4.25e-01 75.9% 30.5%
5072326 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.82 76.0 6.42e-01 100.0% 65.6%
3224742 3755.3.1.9 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › SH3BP5 0.81 75.0 5.33e-01 100.0% 88.4%
3528691 601.19.1.20 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3 0.80 72.0 6.17e-01 100.0% 64.0%
3234270 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.80 59.0 5.83e-01 81.0% 72.9%
3416168 4177.1.1.4 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › IMD 0.80 74.0 5.25e-01 100.0% 36.8%
4028809 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.80 58.0 4.92e-01 79.7% 46.9%
3402327 3755.3.1.324 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF725 0.80 71.0 5.55e-01 100.0% 47.1%
3414399 5086.1.1.106 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF725 0.79 71.0 5.45e-01 100.0% 45.3%
3627448 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.78 65.0 5.75e-01 88.6% 65.5%
3544537 604.1.1.63 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SESTD1 0.78 62.0 5.44e-01 91.1% 59.1%
3634896 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.77 61.0 5.39e-01 87.3% 59.1%
3781013 3291.1.1.170 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › WWC1 0.76 67.0 5.66e-01 100.0% 61.5%
3824276 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.75 60.0 4.46e-01 83.5% 92.8%
3409567 3755.3.1.324 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF725 0.73 64.0 5.09e-01 100.0% 50.9%
3918963 2004.1.1.118 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 0.72 51.0 3.42e-01 100.0% 19.0%
4979047 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 53.0 4.22e-01 84.8% 39.4%
3600869 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.70 61.0 5.43e-01 98.7% 73.0%
D3 medium residues 167-230
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 37.0 3.40e-01 90.6% 38.4%
6oyfA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.65 33.0 2.45e-01 92.2% 18.8%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.57 44.0 3.90e-01 87.5% 62.2%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 46.0 3.63e-01 92.2% 98.6%
1dmrA03 3.90.55.10 Alpha Beta › Alpha-Beta Complex › Dimethylsulfoxide Reductase; domain 3 › Dimethylsulfoxide Reductase, domain 3 0.56 33.0 3.05e-01 87.5% 41.4%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.55 40.0 2.91e-01 76.6% 82.6%
3c0bA02 3.30.420.190 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › conserved archaeal protein q6m145 0.54 42.0 2.98e-01 87.5% 95.9%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.54 42.0 3.28e-01 98.4% 40.3%
2fkiA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.54 42.0 3.61e-01 92.2% 80.5%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 45.0 3.56e-01 96.9% 95.0%
4zm3B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 39.0 3.04e-01 79.7% 62.0%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.52 34.0 3.54e-01 84.4% 73.7%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.52 44.0 3.17e-01 100.0% 80.5%
5i92F01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 38.0 2.79e-01 100.0% 29.0%
4am6A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 35.0 2.45e-01 81.2% 21.4%
3rv0B03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 41.0 3.93e-01 92.2% 96.2%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.51 37.0 3.29e-01 78.1% 54.7%
5cqgA02 3.10.10.20 Alpha Beta › Roll › HIV Type 1 Reverse Transcriptase; Chain A, domain 1 › 0.51 40.0 3.86e-01 85.9% 98.6%
6yiiA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.50 43.0 3.00e-01 100.0% 28.6%
4fh3A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.50 44.0 3.57e-01 100.0% 80.0%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3252212 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.65 41.0 3.89e-01 93.8% 54.7%
3259532 167.1.1.1 alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 0.61 43.0 3.29e-01 100.0% 32.7%
3645136 3887.2.1.1 a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.60 31.0 2.62e-01 90.6% 29.5%
3578562 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 36.0 3.19e-01 96.9% 42.1%
3460270 603.1.1.143 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF547 0.58 39.0 2.76e-01 96.9% 22.0%
3957864 881.1.1.17 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3710 0.58 48.0 3.60e-01 95.3% 80.0%
3959240 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 41.0 3.43e-01 78.1% 72.0%
3786028 101.1.2.86 alpha arrays › HTH › HTH › winged helix domain › SMC_Nse1 0.57 37.0 2.85e-01 95.3% 29.0%
4446761 3433.1.2.0 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain 0.57 38.0 4.11e-01 70.3% 100.0%
3580501 101.46.1.1 alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain › CDC73_N 0.56 39.0 3.30e-01 73.4% 46.4%
3207498 3409.1.1.3 a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › ATG14 0.56 49.0 3.12e-01 100.0% 52.6%
5043951 2498.2.1.6 mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › S_layer_C 0.54 46.0 3.55e-01 100.0% 71.2%
5045719 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 43.0 3.47e-01 98.4% 45.2%
5078195 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 31.0 3.00e-01 98.4% 48.0%
3217273 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 43.0 2.74e-01 89.1% 87.4%
4991405 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.53 45.0 2.84e-01 100.0% 75.4%
4970999 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.53 39.0 3.04e-01 84.4% 53.9%
4978789 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 3.50e-01 81.2% 84.2%
3786981 381.1.1.0 few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat 0.52 42.0 3.29e-01 92.2% 72.5%
3941694 241.11.1.1 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.52 39.0 3.42e-01 85.9% 83.6%
5012656 330.5.1.0 a+b two layers › dsRBD-like › Bacillus phage protein › Bacillus phage protein 0.52 42.0 3.88e-01 93.8% 96.5%
3605286 2008.2.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.51 34.0 3.04e-01 70.3% 82.0%
4976626 3714.1.1.0 a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.51 41.0 2.86e-01 98.4% 25.3%
3236563 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.51 40.0 3.35e-01 90.6% 92.0%
3356481 386.1.1.117 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.51 41.0 3.82e-01 90.6% 89.2%
4026701 180.1.1.1 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.51 45.0 3.19e-01 100.0% 58.0%
4966410 3281.1.1.0 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related 0.51 45.0 2.62e-01 100.0% 29.6%
3234330 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 43.0 3.70e-01 100.0% 72.7%
3282087 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.51 43.0 3.15e-01 100.0% 66.5%
3163931 219.1.1.79 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.51 43.0 3.26e-01 95.3% 39.4%
5016077 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.50 36.0 2.95e-01 93.8% 38.8%
3972594 3714.1.1.1 a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › LonC_helical 0.50 44.0 2.96e-01 100.0% 27.5%
3894482 314.1.1.0 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.50 44.0 2.93e-01 100.0% 80.0%
3184613 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.50 40.0 3.18e-01 98.4% 57.3%
3821875 3887.2.1.1 a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.50 44.0 3.83e-01 100.0% 87.0%
D4 medium residues 263-301
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3g36B00 1.20.890.10 Mainly Alpha › Up-down Bundle › cAMP-dependent Protein Kinase, Chain A › cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain 0.77 63.0 5.78e-01 100.0% 70.6%
2lkoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 54.0 3.78e-01 94.9% 29.7%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 56.0 4.44e-01 92.3% 48.7%
5ffdA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.68 46.0 3.15e-01 71.8% 40.1%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.67 52.0 4.97e-01 100.0% 73.1%
1hlvA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 52.0 4.73e-01 100.0% 71.7%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.64 53.0 3.51e-01 100.0% 21.6%
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.64 52.0 4.51e-01 94.9% 60.9%
1q2wA03 1.10.1840.10 Mainly Alpha › Orthogonal Bundle › main proteinase (3clpro) structure, domain 3 › main proteinase (3clpro) structure, domain 3 0.63 49.0 3.69e-01 89.7% 87.5%
4hteA03 1.10.167.30 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › 0.62 52.0 4.13e-01 94.9% 83.7%
3mgdB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 49.0 3.33e-01 94.9% 23.7%
1bh9B00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.61 50.0 3.97e-01 97.4% 47.2%
4crwA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 47.0 2.95e-01 84.6% 33.2%
3q1pA01 6.10.250.1120 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 44.0 4.41e-01 87.2% 76.9%
4b94A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 44.0 3.13e-01 84.6% 23.4%
2jdiH02 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.60 45.0 4.43e-01 79.5% 83.3%
7z8iC01 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.60 49.0 3.93e-01 94.9% 90.1%
2db7A01 6.10.250.980 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 53.0 4.76e-01 100.0% 79.2%
2qf9A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.59 50.0 3.38e-01 100.0% 60.9%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.59 41.0 2.94e-01 74.4% 24.8%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.59 46.0 3.24e-01 100.0% 55.3%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.58 47.0 3.84e-01 92.3% 46.7%
1uouA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.58 43.0 3.56e-01 79.5% 54.4%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 47.0 4.18e-01 92.3% 62.1%
3m1cB01 3.30.390.170 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.56 45.0 3.26e-01 89.7% 32.1%
5mmiJ02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.56 45.0 3.88e-01 97.4% 60.9%
2hepA00 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.55 43.0 4.24e-01 92.3% 83.3%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.54 44.0 3.87e-01 100.0% 60.0%
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 46.0 3.42e-01 100.0% 76.8%
5mmjb02 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.53 44.0 3.96e-01 97.4% 67.3%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.53 46.0 3.80e-01 100.0% 57.7%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.52 45.0 3.59e-01 97.4% 60.0%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.51 44.0 3.89e-01 100.0% 70.7%
5lnkA00 1.20.58.1610 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 0.51 43.0 3.13e-01 100.0% 39.1%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3255248 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.92 77.0 6.15e-01 89.7% 50.0%
3403705 4271.1.1.3 alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N 0.83 71.0 4.32e-01 100.0% 15.9%
5024109 3646.1.1.1 alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ 0.74 62.0 3.87e-01 100.0% 17.8%
3197497 109.4.1.313 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_N 0.64 49.0 3.09e-01 84.6% 36.2%
3785231 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.63 51.0 3.10e-01 100.0% 22.7%
3554931 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 43.0 3.85e-01 74.4% 63.0%
3652373 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.60 48.0 3.01e-01 92.3% 17.3%
3805996 192.10.1.7 alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain › HisKA 0.60 46.0 3.78e-01 84.6% 69.3%
3591358 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.60 47.0 3.05e-01 100.0% 31.8%
3902100 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.59 47.0 3.68e-01 92.3% 41.2%
4062575 192.6.1.1 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE 0.59 46.0 4.26e-01 84.6% 76.0%
4089954 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.58 44.0 4.28e-01 82.1% 77.8%
3456370 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.58 47.0 3.17e-01 100.0% 21.3%
1884689 150.1.1.5 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF305 0.57 48.0 3.38e-01 100.0% 75.7%
3592990 3050.1.1.0 alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain 0.57 45.0 3.31e-01 97.4% 31.4%
3425693 174.1.1.1 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.56 48.0 3.72e-01 97.4% 84.4%
4590991 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.54 44.0 4.21e-01 100.0% 72.9%
3402853 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.53 48.0 4.42e-01 100.0% 84.0%
3485269 192.6.1.3 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATPD_C_metazoa 0.52 46.0 4.43e-01 100.0% 97.8%
4012407 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.51 44.0 3.84e-01 97.4% 70.0%
4014112 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.50 44.0 4.22e-01 100.0% 91.1%
4487102 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.50 40.0 3.03e-01 100.0% 86.4%