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OQ129410.1__WIC40091.1__SEA_DAKITI_105__00104

Bact-Vir

OQ129410.1__WIC40091.1__SEA_DAKITI_105__00104

Identity

Accession:
OQ129410 ↗
Kingdom:
phage

Quality

70.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-97
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.71 55.0 4.76e-01 83.3% 65.5%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.70 50.0 5.09e-01 81.1% 75.9%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.64 55.0 4.85e-01 98.9% 75.0%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.61 48.0 4.03e-01 83.3% 62.9%
1av4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.61 51.0 3.31e-01 92.2% 88.2%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 46.0 4.66e-01 84.4% 85.1%
1n2bB02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.59 41.0 3.92e-01 71.1% 62.5%
7f13A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 45.0 3.89e-01 82.2% 84.0%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.58 50.0 4.35e-01 94.4% 89.7%
3ef8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 45.0 3.94e-01 86.7% 94.6%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 42.0 3.69e-01 77.8% 66.7%
2xglA00 3.10.450.300 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein 0.58 43.0 4.34e-01 80.0% 93.4%
3c1aA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 44.0 3.79e-01 83.3% 73.1%
3grdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 46.0 4.16e-01 92.2% 83.3%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 46.0 4.24e-01 92.2% 82.1%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 4.18e-01 85.6% 95.4%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.56 46.0 4.70e-01 91.1% 93.1%
2qguA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 46.0 4.43e-01 87.8% 100.0%
2daxA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.56 43.0 3.75e-01 83.3% 73.8%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 3.66e-01 88.9% 81.2%
4mp8A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.55 39.0 3.24e-01 73.3% 87.0%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.55 39.0 3.66e-01 73.3% 88.8%
1gkuB07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.55 38.0 3.69e-01 72.2% 90.2%
2w18A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 48.0 3.33e-01 97.8% 52.9%
3ec9A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 3.99e-01 92.2% 83.7%
7bwcA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 46.0 3.24e-01 98.9% 51.4%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 41.0 3.72e-01 85.6% 87.2%
3hk4A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 3.98e-01 91.1% 86.4%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 3.78e-01 84.4% 100.0%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 3.65e-01 87.8% 91.9%
1tp6A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 3.73e-01 85.6% 99.2%
3dm8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.59e-01 83.3% 93.3%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 35.0 3.36e-01 70.0% 60.2%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.92e-01 88.9% 86.2%
1s1dA00 2.120.10.100 Mainly Beta › 6 Propeller › Neuraminidase › Apyrase 0.52 44.0 3.15e-01 100.0% 44.5%
1qwoA01 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.52 43.0 2.84e-01 92.2% 90.8%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 43.0 4.04e-01 94.4% 85.7%
1fmbA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.51 37.0 3.55e-01 80.0% 66.3%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.83e-01 85.6% 88.3%
3qc2B00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 43.0 3.01e-01 100.0% 50.4%
2l4vA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.66e-01 91.1% 77.0%
3mh9A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.51 38.0 3.01e-01 82.2% 90.7%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 42.0 3.89e-01 95.6% 87.6%
3eyrA00 3.15.10.40 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Uncharacterised protein PF07273 family, DUF1439 0.50 40.0 3.35e-01 88.9% 53.3%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5016545 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.70 51.0 4.22e-01 76.7% 50.6%
1720172 241.15.1.1 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › Spo0M 0.69 59.0 5.26e-01 92.2% 74.0%
5041112 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.68 48.0 5.37e-01 84.4% 94.3%
1156975 3735.1.1.2 beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › SpvB,TcdB_toxin_midC,TcdB_toxin_midN 0.68 51.0 3.36e-01 80.0% 42.3%
5015593 3111.1.1.0 beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.67 40.0 3.66e-01 90.0% 45.0%
4032717 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.66 50.0 5.48e-01 83.3% 100.0%
5034702 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.66 52.0 4.40e-01 84.4% 57.7%
3470360 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 46.0 4.00e-01 72.2% 80.0%
3271615 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 58.0 3.72e-01 100.0% 43.4%
3781523 243.1.1.42 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MMU163 0.65 49.0 4.26e-01 81.1% 91.6%
2439577 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.65 50.0 4.56e-01 82.2% 76.5%
3420926 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.64 54.0 3.60e-01 93.3% 37.0%
4974736 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.64 50.0 4.31e-01 84.4% 59.3%
4951631 243.3.1.37 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF4901 0.63 48.0 4.44e-01 80.0% 70.4%
3820010 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.61 47.0 3.96e-01 83.3% 60.0%
3296374 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 50.0 4.15e-01 91.1% 83.0%
4888666 243.5.1.4 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › AGAO-like_N2 0.61 46.0 4.59e-01 84.4% 77.1%
3553132 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.61 53.0 3.10e-01 100.0% 25.6%
3303563 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.60 48.0 3.95e-01 85.6% 58.1%
3190371 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 47.0 4.22e-01 85.6% 98.5%
154822 243.1.1.23 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF3887 0.60 48.0 4.43e-01 85.6% 96.5%
3254995 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 52.0 3.35e-01 98.9% 34.2%
3399403 206.1.1.88 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL, DUF1679 0.60 49.0 3.19e-01 92.2% 63.1%
4012804 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.60 50.0 3.85e-01 92.2% 71.6%
3386744 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.60 41.0 3.71e-01 71.1% 72.6%
5012842 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 47.0 4.82e-01 85.6% 89.4%
3415137 5.1.4.394 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_FAM234A_B 0.59 52.0 3.23e-01 98.9% 34.0%
3489888 881.1.1.2 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1 0.59 48.0 4.03e-01 90.0% 61.3%
3591282 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 46.0 4.24e-01 85.6% 100.0%
4011390 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 47.0 4.01e-01 86.7% 90.3%
2722108 243.1.1.67 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Cds6_C 0.59 46.0 4.15e-01 84.4% 96.8%
3969155 283.2.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.58 45.0 3.81e-01 86.7% 49.0%
3801133 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 44.0 3.99e-01 83.3% 89.8%
3968646 283.2.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.57 42.0 3.80e-01 78.9% 55.4%
4207610 274.1.1.13 a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH 0.57 39.0 3.32e-01 71.1% 52.0%
4937710 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.57 43.0 4.03e-01 82.2% 99.1%
3216577 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 45.0 4.21e-01 86.7% 97.3%
4152363 243.1.1.115 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29733 0.57 43.0 3.99e-01 84.4% 95.9%
3411737 5.1.4.15 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RPE65 0.57 50.0 3.16e-01 100.0% 44.0%
3956011 5.1.4.15 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RPE65 0.55 49.0 3.11e-01 98.9% 43.3%
3287916 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.55 41.0 3.70e-01 80.0% 91.5%
4933284 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.55 39.0 3.34e-01 73.3% 86.8%
4623792 243.1.1.34 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like 0.55 45.0 4.13e-01 93.3% 99.2%
3661582 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.55 41.0 4.21e-01 78.9% 89.4%
5024241 330.2.1.5 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.55 44.0 4.39e-01 91.1% 91.6%
3502799 5.1.4.15 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RPE65 0.54 48.0 3.01e-01 98.9% 50.7%
2617497 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.54 42.0 3.96e-01 86.7% 96.5%
4368957 274.1.1.13 a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH 0.54 40.0 3.42e-01 80.0% 81.3%
3282030 331.3.1.23 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF5914 0.53 41.0 3.43e-01 85.6% 65.1%
4613375 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.53 43.0 3.30e-01 87.8% 87.3%
5059491 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.53 38.0 2.92e-01 73.3% 93.0%
3259407 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 38.0 3.94e-01 76.7% 84.7%
3251351 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.53 41.0 3.80e-01 85.6% 96.7%
3185390 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 41.0 3.88e-01 86.7% 79.1%
3032672 5089.1.1.3 beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Gasdermin 0.53 37.0 2.89e-01 74.4% 71.7%
4946622 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 38.0 4.02e-01 76.7% 91.0%
3399804 206.1.1.55 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.53 44.0 2.94e-01 94.4% 63.9%
4935325 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.53 42.0 2.86e-01 88.9% 68.9%
3495405 3131.1.1.1 a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.51 46.0 3.86e-01 98.9% 65.3%
3168921 304.48.1.105 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Peptidase_A2B 0.50 37.0 3.66e-01 80.0% 74.0%
3614237 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.50 37.0 3.28e-01 78.9% 55.1%