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OQ129412.1__WIC40280.1__SEA_HOLLIDAY_85__00085

Bact-Vir

OQ129412.1__WIC40280.1__SEA_HOLLIDAY_85__00085

Identity

Accession:
OQ129412 ↗
Kingdom:
phage

Quality

49.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Getalongvirus› Gordonia_phage_Holliday

TaxID: 3050407

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 102-158
PDB
D2 medium residues 21-69
PDB
Domain cluster: rep: NC_054723.1__YP_010058842.1__KHQ83_gp223__00053__D115-161
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.67 51.0 4.94e-01 83.7% 83.9%
2l6oA01 2.40.10.320 Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain 0.67 53.0 4.66e-01 85.7% 95.8%
3dsoA00 2.40.10.300 Mainly Beta › Beta Barrel › Thrombin, subunit H › Copper resistance protein K 0.65 48.0 4.43e-01 81.6% 87.9%
1u5mA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.65 43.0 4.66e-01 85.7% 91.7%
3p51A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 47.0 3.44e-01 81.6% 40.0%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.63 54.0 4.42e-01 100.0% 52.2%
2iz4A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.63 53.0 5.32e-01 95.9% 100.0%
4wh5A00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.62 46.0 3.32e-01 83.7% 54.4%
2fiyA00 3.90.1670.10 Alpha Beta › Alpha-Beta Complex › FdhE-like fold › FdhE-like domain 0.61 52.0 3.18e-01 93.9% 69.8%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 51.0 4.59e-01 100.0% 67.6%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.60 49.0 2.96e-01 95.9% 100.0%
1q8mA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 47.0 3.72e-01 95.9% 53.7%
3v9fA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 3.03e-01 95.9% 99.0%
3m1cB01 3.30.390.170 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.59 47.0 3.78e-01 95.9% 63.3%
5dezA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 43.0 3.82e-01 81.6% 90.5%
4ak2A01 2.60.40.2720 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 42.0 3.35e-01 83.7% 92.3%
5towB02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 44.0 3.18e-01 89.8% 35.6%
3if4A01 2.20.20.40 Mainly Beta › Single Sheet › Anthopleurin-A › Integron cassette protein 0.57 42.0 4.22e-01 93.9% 78.0%
4tvcA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.57 46.0 3.14e-01 100.0% 23.9%
1yg9A01 2.60.40.1960 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 34.0 3.04e-01 95.9% 39.2%
3r4qA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 42.0 3.21e-01 85.7% 82.6%
2ymsB00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 41.0 3.71e-01 83.7% 85.1%
2aaaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 45.0 3.64e-01 95.9% 45.1%
3klkA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.55 46.0 3.26e-01 95.9% 49.1%
3jyyA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 42.0 3.18e-01 85.7% 67.2%
3h09A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 49.0 2.95e-01 100.0% 72.6%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 43.0 2.89e-01 95.9% 82.0%
3nbxX04 2.40.128.430 Mainly Beta › Beta Barrel › Lipocalin › 0.53 39.0 3.22e-01 87.8% 84.1%
2wvxA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 40.0 2.55e-01 87.8% 25.1%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.64e-01 100.0% 14.4%
2qcuA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.52 40.0 2.89e-01 95.9% 26.7%
1s3iA02 3.10.25.10 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain 0.50 37.0 3.13e-01 89.8% 79.4%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3858171 6129.1.1.0 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family 0.75 49.0 3.08e-01 85.7% 13.5%
3609044 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 49.0 4.96e-01 100.0% 72.9%
4962679 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.67 56.0 5.43e-01 93.9% 89.1%
4962327 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.67 57.0 5.51e-01 93.9% 89.1%
4095166 217.2.1.1 ↗ a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.66 54.0 4.41e-01 93.9% 77.9%
5021656 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.65 55.0 5.50e-01 93.9% 94.0%
3405120 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.65 49.0 3.30e-01 83.7% 46.2%
2814716 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.65 55.0 4.45e-01 100.0% 49.5%
3292420 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.65 55.0 4.51e-01 100.0% 52.2%
4111597 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.64 54.0 4.95e-01 100.0% 72.3%
4087314 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 54.0 4.63e-01 100.0% 58.7%
5021658 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.63 51.0 5.09e-01 93.9% 94.0%
4047241 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 53.0 4.30e-01 100.0% 49.5%
3711668 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.63 46.0 3.91e-01 83.7% 63.3%
4125300 3018.1.1.0 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.62 49.0 4.18e-01 95.9% 84.4%
5019485 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.62 49.0 3.90e-01 93.9% 96.5%
3236612 391.1.2.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.62 51.0 3.57e-01 93.9% 31.5%
3968013 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 48.0 3.06e-01 83.7% 21.2%
4287928 3018.1.1.0 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.61 50.0 4.20e-01 95.9% 88.9%
3435779 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.61 47.0 4.54e-01 85.7% 83.6%
4631894 1.1.12.1 ↗ beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.61 54.0 4.09e-01 100.0% 55.7%
3587781 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 48.0 3.64e-01 93.9% 50.4%
3512217 223.2.1.53 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DUF7278 0.60 48.0 4.39e-01 93.9% 97.1%
4934826 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 49.0 3.08e-01 95.9% 94.9%
3168302 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 46.0 2.68e-01 85.7% 15.7%
4324925 3018.1.1.0 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.59 46.0 3.96e-01 93.9% 84.4%
4089757 270.1.1.2 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C 0.59 49.0 3.79e-01 91.8% 44.5%
3710525 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 49.0 3.53e-01 95.9% 33.3%
4562940 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.58 47.0 2.95e-01 100.0% 89.6%
4428913 5.1.4.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Reg_prop 0.57 44.0 2.73e-01 85.7% 20.3%
5044635 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.57 45.0 3.18e-01 93.9% 95.4%
3449380 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.56 46.0 4.36e-01 95.9% 96.7%
4028315 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.56 45.0 3.62e-01 95.9% 74.5%
4591362 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.56 44.0 3.01e-01 89.8% 29.5%
1870465 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.56 44.0 3.43e-01 91.8% 98.3%
3832887 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.55 40.0 3.36e-01 75.5% 81.9%
5644 809.2.1.1 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.55 41.0 4.04e-01 85.7% 85.7%
1179390 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.55 42.0 3.21e-01 85.7% 69.2%
4176722 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.54 38.0 3.12e-01 75.5% 78.0%
3704424 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.54 41.0 4.10e-01 85.7% 93.9%
4287737 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.53 45.0 2.76e-01 100.0% 19.4%
3265019 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 38.0 3.10e-01 81.6% 65.0%
4032637 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.51 37.0 3.63e-01 81.6% 70.9%
3700743 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.50 40.0 3.58e-01 89.8% 65.7%