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OQ129426.1__WFG33924.1__F10086_2__00002

Bact-Vir

OQ129426.1__WFG33924.1__F10086_2__00002

Identity

Accession:
OQ129426 ↗
Kingdom:
phage

Quality

93.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Baoshanvirus› Staphylococcus_phage_vB_SauM_JDF86

TaxID: 3038179

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-85
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 47.0 4.77e-01 100.0% 69.5%
1oj6A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 53.0 4.39e-01 96.3% 91.8%
7qoaA01 1.10.4160.10 Mainly Alpha › Orthogonal Bundle › Hydantoin permease › Hydantoin permease 0.58 50.0 3.29e-01 100.0% 55.6%
2rfbA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.57 49.0 3.33e-01 100.0% 37.9%
4l0fA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.57 49.0 3.15e-01 100.0% 32.5%
3ccyA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 49.0 4.09e-01 98.8% 57.1%
2qgsB01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.56 42.0 4.17e-01 81.5% 76.1%
3h0gA05 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.56 47.0 4.00e-01 98.8% 99.3%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 40.0 3.91e-01 86.4% 68.8%
3l9tA01 1.10.1240.70 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.55 32.0 3.26e-01 98.8% 56.6%
1yhuB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 45.0 3.83e-01 97.5% 92.4%
6lcuA02 1.10.10.470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 0.53 40.0 3.66e-01 84.0% 61.9%
7jiuA03 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.53 45.0 3.88e-01 100.0% 74.3%
4apyA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 45.0 2.95e-01 100.0% 33.6%
3rk6A00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 37.0 2.72e-01 98.8% 27.6%
8cdaC01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.51 40.0 3.65e-01 100.0% 62.4%
3ljcA02 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 37.0 3.27e-01 87.7% 50.8%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.50 42.0 3.68e-01 97.5% 97.7%
4dq5B00 1.10.530.50 Mainly Alpha › Orthogonal Bundle › Lysozyme › Peptidase U40 0.50 40.0 3.24e-01 87.7% 70.0%
2efjA01 1.10.1200.270 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Methyltransferase, alpha-helical capping domain 0.50 44.0 3.77e-01 100.0% 79.9%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3179864 7579.1.1.36 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.62 48.0 3.09e-01 85.2% 87.8%
4487404 235.1.1.21 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lysozyme_like 0.62 53.0 4.09e-01 98.8% 93.8%
4567840 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.61 40.0 4.51e-01 96.3% 98.2%
3934456 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.59 35.0 3.77e-01 98.8% 67.1%
4020465 149.1.1.0 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 0.58 50.0 3.16e-01 100.0% 31.0%
3683668 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 37.0 3.21e-01 96.3% 40.8%
3236141 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.57 47.0 4.04e-01 92.6% 66.7%
2085171 4033.1.1.0 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like 0.57 46.0 4.15e-01 100.0% 64.0%
5061741 7575.1.1.4 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C11 0.55 48.0 3.16e-01 100.0% 31.5%
3522705 109.4.1.839 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Maestro_HEAT 0.54 39.0 2.97e-01 77.8% 51.2%
3285527 102.1.1.157 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › OHCU_decarbox 0.54 42.0 4.08e-01 96.3% 76.8%
4969176 3962.1.1.0 ↗ alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit 0.53 46.0 3.88e-01 100.0% 60.0%
3407435 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 44.0 4.09e-01 100.0% 73.6%
4177670 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.52 44.0 2.83e-01 100.0% 67.6%
3892814 108.1.1.68 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › TPGS1_C 0.51 40.0 3.08e-01 86.4% 65.6%