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OQ164647.1__WBM58844.1__vBValMPVA8_122__00122

Bact-Vir

OQ164647.1__WBM58844.1__vBValMPVA8_122__00122

Identity

Accession:
OQ164647 ↗
Kingdom:
phage

Quality

62.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Schizotequatrovirus› Vibrio_phage_vB_ValM_PVA8

TaxID: 3019005

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 823-919
PDB
Domain cluster: rep: IMGVR_UViG_3300010235_000004-3300010235-Ga0136247_100002931__D99-185
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13884.12 best Peptidase_S74 45.0 1.40e-11 47.4% 75.9%
D2 medium residues 456-534
PDB
Domain cluster: rep: MW960037.1__QWY83581.1__X__00027__D159-241
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.70 52.0 4.30e-01 89.9% 45.5%
2yzyA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.70 51.0 4.02e-01 84.8% 37.4%
8ainB01 3.10.450.250 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor 0.67 51.0 4.65e-01 81.0% 84.8%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.67 51.0 3.93e-01 82.3% 36.7%
4gakA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.66 46.0 3.22e-01 72.2% 79.6%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 54.0 4.53e-01 91.1% 55.9%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.65 56.0 4.06e-01 94.9% 46.5%
7szeB02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.63 54.0 4.07e-01 92.4% 54.3%
2x1cB01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.63 48.0 3.28e-01 81.0% 86.9%
2qqpA03 2.60.40.4260 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 51.0 4.30e-01 91.1% 66.4%
2cn2A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 53.0 3.47e-01 100.0% 58.3%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 50.0 4.10e-01 89.9% 51.0%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.61 41.0 4.42e-01 81.0% 83.6%
1n7vA02 2.60.330.10 Mainly Beta › Sandwich › receptor-binding protein prd1-p2, domain 2 › receptor-binding protein prd1-p2, domain 2 0.60 47.0 4.11e-01 86.1% 81.3%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 47.0 3.93e-01 86.1% 64.3%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 47.0 3.76e-01 87.3% 74.5%
3kg6C00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.58 46.0 3.20e-01 87.3% 81.6%
2p3nA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.56 50.0 4.19e-01 98.7% 68.9%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 43.0 3.19e-01 87.3% 83.8%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 4.25e-01 84.8% 86.4%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 37.0 3.72e-01 74.7% 68.7%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.68e-01 92.4% 75.7%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.64e-01 93.7% 54.3%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 40.0 3.39e-01 83.5% 95.7%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 46.0 3.52e-01 100.0% 88.0%
3mbhA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 44.0 3.02e-01 94.9% 67.8%
2jj6A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.60e-01 93.7% 57.5%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3974671 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.83 78.0 7.59e-01 100.0% 97.6%
3967853 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.79 73.0 6.39e-01 100.0% 72.2%
4033743 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.78 69.0 6.77e-01 94.9% 92.9%
4221174 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.78 72.0 6.73e-01 100.0% 95.8%
4033339 520.1.1.2 ↗ beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › PF27308 0.78 67.0 6.58e-01 93.7% 91.8%
4031359 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.76 67.0 6.58e-01 96.2% 94.1%
2581425 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.75 48.0 5.59e-01 79.7% 92.7%
4681650 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.71 55.0 4.18e-01 83.5% 36.6%
4311063 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.70 55.0 4.12e-01 83.5% 36.1%
3337354 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.67 52.0 4.33e-01 81.0% 94.6%
5003245 243.8.1.0 ↗ a+b two layers › Cystatin-like › Uracil-DNA glycosylase inhibitor protein › Uracil-DNA glycosylase inhibitor protein 0.66 47.0 4.98e-01 77.2% 85.7%
3214007 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.65 48.0 4.10e-01 79.7% 49.6%
4327587 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.64 49.0 3.63e-01 81.0% 43.6%
4032161 809.1.1.0 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.64 41.0 4.55e-01 88.6% 81.2%
4025256 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.64 47.0 4.71e-01 75.9% 91.3%
3588252 6043.1.1.0 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.63 41.0 4.47e-01 89.9% 81.5%
3960946 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.63 51.0 4.07e-01 87.3% 95.5%
3342083 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 54.0 3.68e-01 97.5% 41.0%
4651813 7515.1.1.5 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,SGSH_C 0.62 55.0 3.39e-01 100.0% 85.8%
3242312 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 53.0 3.70e-01 100.0% 62.4%
3419181 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.61 48.0 3.28e-01 100.0% 23.4%
5036065 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 49.0 5.00e-01 87.3% 97.3%
3853086 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 52.0 3.40e-01 100.0% 42.0%
4955729 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 49.0 3.90e-01 100.0% 44.1%
2448364 10.1.1.19 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_leg-like 0.58 46.0 3.42e-01 87.3% 81.1%
4945657 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.56 39.0 3.10e-01 72.2% 66.9%
3616213 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 47.0 3.38e-01 100.0% 44.0%
4651619 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 44.0 3.33e-01 86.1% 77.4%
4028006 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 48.0 3.19e-01 98.7% 34.8%
3716707 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 42.0 3.21e-01 83.5% 46.7%
D3 medium residues 700-806
PDB