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OQ164647.1__WBM59047.1__vBValMPVA8_325__00325
Bact-VirOQ164647.1__WBM59047.1__vBValMPVA8_325__00325
Identity
- Accession:
- OQ164647 ↗
- Kingdom:
- phage
Quality
81.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Schizotequatrovirus›
Vibrio_phage_vB_ValM_PVA8
TaxID: 3019005
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-112
Domain cluster:
rep: IMGVR_UViG_3300013103_000050-3300013103-Ga0164318_100006802__D15-126
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kmaA02 | 3.30.1360.230 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Sufu, C-terminal domain | 0.54 | 35.0 | 3.34e-01 | 86.4% | 55.5% |
| 4bl8B03 | 3.30.1360.230 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Sufu, C-terminal domain | 0.53 | 35.0 | 3.25e-01 | 86.4% | 51.5% |
| 2b0lC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 34.0 | 3.53e-01 | 86.4% | 74.5% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3595663 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.59 | 31.0 | 3.11e-01 | 80.6% | 46.4% |
| 3956851 | 3785.1.1.0 ↗ | a+b three layers › Suppressor of Fused, C-terminal domain › Suppressor of Fused, C-terminal domain › Suppressor of Fused, C-terminal domain | 0.54 | 35.0 | 3.41e-01 | 89.3% | 57.4% |
| 5066995 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 30.0 | 3.85e-01 | 79.6% | 100.0% |
| 3538818 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 42.0 | 3.81e-01 | 88.3% | 89.7% |
| 5049535 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 33.0 | 3.68e-01 | 86.4% | 82.5% |
| 1117778 | 3785.1.1.2 ↗ | a+b three layers › Suppressor of Fused, C-terminal domain › Suppressor of Fused, C-terminal domain › Suppressor of Fused, C-terminal domain › SUFU_C | 0.51 | 34.0 | 2.88e-01 | 85.4% | 38.0% |
| 3286535 | 101.1.2.494 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25873 | 0.51 | 31.0 | 3.32e-01 | 83.5% | 70.6% |
| 3167249 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 40.0 | 4.00e-01 | 96.1% | 84.8% |
D2
high
residues 146-266
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gwiA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.65 | 51.0 | 3.52e-01 | 83.5% | 57.5% |
| 2ggfA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.63 | 41.0 | 3.94e-01 | 71.1% | 56.9% |
| 1c9bA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 31.0 | 3.32e-01 | 78.5% | 60.4% |
| 1aisB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 31.0 | 3.46e-01 | 77.7% | 68.1% |
| 2vm6A00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.54 | 38.0 | 3.65e-01 | 78.5% | 60.4% |
| 2katA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 36.0 | 3.74e-01 | 97.5% | 71.3% |
| 1xg7A02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.53 | 39.0 | 3.69e-01 | 89.3% | 65.0% |
| 2gnxA01 | 1.10.3450.30 | Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › | 0.52 | 40.0 | 3.59e-01 | 95.0% | 57.0% |
| 1om2A00 | 1.20.960.10 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › Mitochondrial outer membrane translocase complex, subunit Tom20 domain | 0.51 | 33.0 | 3.69e-01 | 95.0% | 84.2% |
| 1sqgA01 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.51 | 35.0 | 3.37e-01 | 71.1% | 65.2% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3269214 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 41.0 | 4.05e-01 | 88.4% | 64.6% |
| 4943136 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.57 | 31.0 | 3.58e-01 | 78.5% | 71.1% |
| 3488831 | 109.4.1.70 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID | 0.54 | 39.0 | 3.75e-01 | 76.0% | 88.3% |