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OQ164647.1__WBM59077.1__vBValMPVA8_355__00355
Bact-VirOQ164647.1__WBM59077.1__vBValMPVA8_355__00355
Identity
- Accession:
- OQ164647 ↗
- Kingdom:
- phage
Quality
92.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Schizotequatrovirus›
Vibrio_phage_vB_ValM_PVA8
TaxID: 3019005
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-47
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6pxcA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.82 | 66.0 | 4.99e-01 | 88.9% | 72.1% |
| 2xp1A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.80 | 64.0 | 5.00e-01 | 88.9% | 54.7% |
| 3k2tA01 | 3.30.505.50 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain | 0.77 | 59.0 | 5.90e-01 | 86.7% | 87.0% |
| 2ci9B00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.76 | 58.0 | 4.61e-01 | 88.9% | 74.0% |
| 2cs0A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.75 | 60.0 | 4.75e-01 | 91.1% | 81.1% |
| 2zbbA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.69 | 53.0 | 4.45e-01 | 86.7% | 59.3% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.67 | 46.0 | 3.46e-01 | 73.3% | 40.5% |
| 1x3bA00 | 2.30.180.10 | Mainly Beta › Roll › FAS1 domain › FAS1 domain | 0.67 | 55.0 | 3.97e-01 | 100.0% | 54.8% |
| 5c17A00 | 3.30.450.410 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.66 | 54.0 | 3.64e-01 | 100.0% | 46.6% |
| 7asgA01 | 2.30.180.10 | Mainly Beta › Roll › FAS1 domain › FAS1 domain | 0.66 | 55.0 | 4.06e-01 | 100.0% | 58.6% |
| 3i3tA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.66 | 54.0 | 3.32e-01 | 95.6% | 19.8% |
| 5m8cB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.65 | 50.0 | 3.04e-01 | 86.7% | 17.9% |
| 1lmeA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.65 | 54.0 | 3.78e-01 | 95.6% | 51.9% |
| 1e88A03 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.65 | 45.0 | 4.64e-01 | 86.7% | 81.0% |
| 2f4lA02 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.64 | 43.0 | 4.44e-01 | 73.3% | 100.0% |
| 4gn1C02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.64 | 46.0 | 3.29e-01 | 80.0% | 47.3% |
| 1ym5A01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.64 | 53.0 | 3.84e-01 | 100.0% | 32.4% |
| 3ihpA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.63 | 47.0 | 3.66e-01 | 86.7% | 42.2% |
| 3hi2B00 | 3.30.2310.40 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › | 0.63 | 45.0 | 3.54e-01 | 77.8% | 91.8% |
| 2cnzA00 | 2.60.40.1570 | Mainly Beta › Sandwich › Immunoglobulin-like › Dr adhesin | 0.62 | 48.0 | 3.53e-01 | 86.7% | 80.5% |
| 2jwpA00 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.61 | 51.0 | 3.54e-01 | 100.0% | 44.3% |
| 3fgbA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 47.0 | 2.84e-01 | 88.9% | 26.4% |
| 4g2sA00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.61 | 50.0 | 3.94e-01 | 100.0% | 91.5% |
| 4bi3A01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.60 | 46.0 | 3.90e-01 | 95.6% | 52.7% |
| 4ms4B02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 43.0 | 2.97e-01 | 84.4% | 35.0% |
| 2kc8A00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.57 | 44.0 | 3.56e-01 | 88.9% | 51.6% |
| 4q8gA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.56 | 43.0 | 2.67e-01 | 97.8% | 88.1% |
| 1epaA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 45.0 | 3.19e-01 | 95.6% | 46.3% |
| 4jhyA00 | 3.30.530.80 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.55 | 45.0 | 3.17e-01 | 95.6% | 71.2% |
| 6ijfC01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.55 | 42.0 | 3.55e-01 | 95.6% | 50.5% |
| 3g1jA00 | 2.30.30.350 | Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. | 0.53 | 40.0 | 3.32e-01 | 86.7% | 73.3% |
| 3wirA03 | 2.60.420.10 | Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 | 0.53 | 44.0 | 3.97e-01 | 100.0% | 85.5% |
| 1vr8A00 | 3.40.1000.20 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like | 0.52 | 40.0 | 2.96e-01 | 88.9% | 61.5% |
| 3rheA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 38.0 | 2.94e-01 | 86.7% | 50.9% |
| 1goiA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.51 | 40.0 | 3.18e-01 | 84.4% | 84.4% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3282814 | 3097.1.1.0 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y | 0.85 | 66.0 | 5.46e-01 | 86.7% | 50.0% |
| 3954395 | 3097.1.1.0 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y | 0.84 | 66.0 | 6.19e-01 | 86.7% | 72.7% |
| 3961965 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.82 | 63.0 | 5.66e-01 | 86.7% | 61.5% |
| 4588602 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.81 | 62.0 | 6.06e-01 | 86.7% | 80.0% |
| 2088430 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.81 | 62.0 | 5.68e-01 | 86.7% | 67.2% |
| 4052309 | 7528.1.1.2 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_II | 0.78 | 62.0 | 4.60e-01 | 88.9% | 34.8% |
| 4554426 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.77 | 59.0 | 5.61e-01 | 86.7% | 74.1% |
| 3518947 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.76 | 60.0 | 4.42e-01 | 88.9% | 68.3% |
| 3961969 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.75 | 57.0 | 5.29e-01 | 86.7% | 66.7% |
| 3289024 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.74 | 62.0 | 4.96e-01 | 100.0% | 60.0% |
| 3310464 | 375.1.1.69 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 | 0.73 | 56.0 | 5.52e-01 | 88.9% | 78.0% |
| 5062772 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.73 | 56.0 | 4.33e-01 | 86.7% | 42.9% |
| 3458699 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.72 | 54.0 | 3.69e-01 | 82.2% | 24.5% |
| 3517650 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.71 | 56.0 | 4.37e-01 | 88.9% | 80.0% |
| 4994059 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.71 | 55.0 | 3.98e-01 | 88.9% | 33.3% |
| 4838661 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.71 | 53.0 | 4.17e-01 | 86.7% | 35.8% |
| 3839556 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.70 | 55.0 | 3.40e-01 | 88.9% | 15.3% |
| 3905631 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.69 | 54.0 | 4.14e-01 | 88.9% | 48.2% |
| 3960379 | 286.1.1.0 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like | 0.69 | 52.0 | 4.30e-01 | 86.7% | 44.4% |
| 3923314 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.69 | 57.0 | 3.63e-01 | 97.8% | 30.2% |
| 3190458 | 3484.1.1.2 ↗ | a+b two layers › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Glyco_hydro_64 | 0.68 | 53.0 | 3.60e-01 | 88.9% | 24.0% |
| 3606484 | 66.1.1.3 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Sol_Rieske_ferrdox | 0.68 | 56.0 | 3.98e-01 | 100.0% | 80.0% |
| 3324429 | 239.3.1.1 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin | 0.67 | 57.0 | 4.02e-01 | 100.0% | 57.3% |
| 943 | 220.1.1.47 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 | 0.67 | 46.0 | 3.66e-01 | 73.3% | 49.0% |
| 3196528 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.67 | 51.0 | 4.73e-01 | 86.7% | 73.3% |
| 3623273 | 101.1.2.712 ↗ | alpha arrays › HTH › HTH › winged helix domain › FNIP_C | 0.66 | 50.0 | 3.12e-01 | 86.7% | 13.8% |
| 3506774 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.66 | 52.0 | 3.90e-01 | 88.9% | 69.2% |
| 3967714 | 241.1.1.6 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN | 0.64 | 50.0 | 3.59e-01 | 88.9% | 70.0% |
| 4937757 | 246.2.1.9 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 | 0.63 | 51.0 | 3.42e-01 | 88.9% | 100.0% |
| 4995786 | 3153.1.1.0 ↗ | a+b two layers › PipX › PipX › PipX | 0.62 | 43.0 | 3.56e-01 | 73.3% | 45.9% |
| 3839119 | 4292.2.1.1 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › FlaG | 0.62 | 43.0 | 3.65e-01 | 71.1% | 49.3% |
| 4991801 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.62 | 50.0 | 3.84e-01 | 100.0% | 83.2% |
| 4996288 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.62 | 47.0 | 3.48e-01 | 88.9% | 33.3% |
| 5035204 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.61 | 42.0 | 2.88e-01 | 73.3% | 91.7% |
| 4109302 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.60 | 45.0 | 3.58e-01 | 86.7% | 51.4% |
| 3929586 | 4184.1.1.0 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat | 0.60 | 45.0 | 4.45e-01 | 84.4% | 78.0% |
| 3781112 | 3561.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 | 0.57 | 40.0 | 2.31e-01 | 75.6% | 14.2% |
| 3971707 | 268.1.1.1 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 | 0.55 | 41.0 | 3.06e-01 | 82.2% | 69.6% |
| 3837276 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.55 | 39.0 | 3.59e-01 | 80.0% | 84.6% |
| 3687066 | 213.1.1.21 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › LPG_synthase_C | 0.55 | 38.0 | 2.99e-01 | 73.3% | 50.0% |
| 3789625 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.55 | 41.0 | 3.15e-01 | 93.3% | 88.9% |
| 3982093 | 268.1.1.1 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 | 0.54 | 43.0 | 3.09e-01 | 88.9% | 35.7% |
| 3388135 | 4292.2.1.1 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › FlaG | 0.54 | 40.0 | 3.48e-01 | 84.4% | 66.7% |
| 3605286 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.54 | 37.0 | 3.03e-01 | 75.6% | 55.0% |
| 1680171 | 213.1.1.21 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › LPG_synthase_C | 0.53 | 43.0 | 3.26e-01 | 97.8% | 68.0% |
| 3558235 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.53 | 40.0 | 3.15e-01 | 100.0% | 86.7% |
| 138215 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.53 | 40.0 | 3.31e-01 | 84.4% | 61.9% |